Parental gene:

BTF3L4, ENSCAFG00000003782

Aliases:None
Description:basic transcription factor 3-like 4 [Source:HGNC Symbol;Acc:30547]
Organism:Dog (Canis familiaris)
Coordinates:15:9240367..9257716(-)


>ENSCAFG00000003782
ATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCCGGATAGGGGGCAAGGGTACAGCTCGCAGAAAGAAGAAGGT
GGTACACAGAACAGCTACAGCTGATGACAAAAAACTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTA
TTGAAGAGGTGAACATGATTAAAGATGATGGGACAGTTATTCATTTCAACAATCCCAAAGTCCAAGCTTCCCTTTCTGCT
AACACCTTTGCAATTACTGGTCATGCAGAAGCCAAACCAATCACAGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGC
TGACAGCTTAACAAGTCTTAGGAAGTTAGCTGAACAGTTCCCTCGGCAAGTGTTGGATAGCAAAGCACCAAAACCAGAAG
ACATTGATGAAGAGGATGATGATGTTCCAGATCTCGTAGAAAATTTTGATGAGGCATCAAAGAATGAAGCTAACTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 23 .35 RPM
SRP017611_brain 25 .64 RPM
SRP017611_kidney 51 .77 RPM
SRP017611_liver 15 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011025 ortholog_one2one 1 retrogene
retro_btau_1030,
Canis familiaris ENSCAFG00000008212 within_species_paralog 3 retrogenes
retro_cfam_1660, retro_cfam_1741, retro_cfam_531,
Callithrix jacchus ENSCJAG00000021582 possible_ortholog 4 retrogenes
retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus ENSCPOG00000004006 ortholog_one2one 1 retrogene
retro_cpor_908,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Dasypus novemcinctus ENSDNOG00000003181 ortholog_one2one 4 retrogenes
retro_dnov_1690, retro_dnov_1928, retro_dnov_2672, retro_dnov_921,
Echinops telfairi ENSETEG00000011923 ortholog_one2one 11 retrogenes
retro_etel_1017, retro_etel_1167, retro_etel_1207, retro_etel_1409, retro_etel_1990, retro_etel_2113, retro_etel_2203, retro_etel_291, retro_etel_663, retro_etel_804, retro_etel_953,
Loxodonta africana ENSLAFG00000016124 ortholog_one2one 3 retrogenes
retro_lafr_206, retro_lafr_769, retro_lafr_947,
Macropus eugenii ENSMEUG00000006135 ortholog_one2one 10 retrogenes
retro_meug_1114, retro_meug_1164, retro_meug_1333, retro_meug_1395, retro_meug_1512, retro_meug_1663, retro_meug_2008, retro_meug_298, retro_meug_903, retro_meug_966,
Myotis lucifugus ENSMLUG00000016884 ortholog_one2one 1 retrogene
retro_mluc_912,
Macaca mulatta ENSMMUG00000003636 possible_ortholog 1 retrogene
retro_mmul_59,
Monodelphis domestica ENSMODG00000000770 ortholog_one2many 2 retrogenes
retro_mdom_33, retro_mdom_992,
Mustela putorius furo ENSMPUG00000006966 ortholog_one2one 2 retrogenes
retro_mputfur_1444, retro_mputfur_924,
Mus musculus ENSMUSG00000028568 ortholog_one2one 2 retrogenes
retro_mmus_1134, retro_mmus_2743,
Oryctolagus cuniculus ENSOCUG00000001517 ortholog_one2one 3 retrogenes
retro_ocun_1001, retro_ocun_1412, retro_ocun_1912,
Otolemur garnettii ENSOGAG00000030256 possible_ortholog 2 retrogenes
retro_ogar_2759, retro_ogar_570,
Ochotona princeps ENSOPRG00000013335 ortholog_one2one 2 retrogenes
retro_opri_719, retro_opri_974,
Procavia capensis ENSPCAG00000006428 ortholog_one2one 3 retrogenes
retro_pcap_129, retro_pcap_307, retro_pcap_373,
Pongo abelii ENSPPYG00000001353 possible_ortholog 2 retrogenes
retro_pabe_1850, retro_pabe_3010,
Rattus norvegicus ENSRNOG00000008512 ortholog_one2one 8 retrogenes
retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,
Sorex araneus ENSSARG00000003173 ortholog_one2one 2 retrogenes
retro_sara_680, retro_sara_690,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_938 96.84 100.00
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2. retro_cfam_2135 65.91 81.65
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Download FASTA sequences of all ENSCAFG00000003782 retrocopies