RetrogeneDB ID: | retro_cjac_2929 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:113288092..113288565(+) | ||
Located in intron of: | ENSCJAG00000006856 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000021582 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFN |
MNQEKLAKLQAQVRI.GKG.AR.KK.VV.RT.TAD..K.QSS.KKLAVNN..GIEEVNMIKDDGTV.HFN | |
Retrocopy | MNQEKLAKLQAQVRIRGKGAARGKKVVVYRTTTADNNKHQSSMKKLAVNNRTGIEEVNMIKDDGTVTHFN |
Parental | NPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDD |
NPK.QASL.ANTFAITGHAEAKP.TEMLPGILSQLGA.SLTSLRKLAEQFPRQVLDSKAPKPED.DEE.D | |
Retrocopy | NPKGQASLFANTFAITGHAEAKPVTEMLPGILSQLGANSLTSLRKLAEQFPRQVLDSKAPKPEDTDEEED |
Parental | DVPDLVENFDEAS-KNEAN |
DVPDLVEN.DEAS.K.EAN | |
Retrocopy | DVPDLVENVDEAS<KDEAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .07 RPM | 5 .64 RPM |
SRP051959_heart | 0 .07 RPM | 8 .70 RPM |
SRP051959_kidney | 0 .02 RPM | 8 .28 RPM |
SRP051959_liver | 0 .09 RPM | 12 .41 RPM |
SRP051959_lung | 0 .02 RPM | 7 .55 RPM |
SRP051959_lymph_node | 0 .00 RPM | 6 .94 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 11 .84 RPM |
SRP051959_spleen | 0 .00 RPM | 8 .68 RPM |