Parental gene:

SSBP1, ENSCAFG00000003885

Aliases:None
Description:Canis lupus familiaris single-stranded DNA binding protein 1 (SSBP1), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001252279]
Organism:Dog (Canis familiaris)
Coordinates:16:7451904..7461464(-)


>ENSCAFG00000003885
ATGTTTCGAAGACCCGTATTACAGGTATTTCATCAGTTTGTGAGACGCGAGTCTGAAATAGCCAGCAGCTTGGTTCTTGA
AAGATCTCTGAACCGTGTGCAGCTGCTTGGGCGAGTGGGTCAGGACCCTGTCATGAGGCAGGTAGAAGGGAAAAACCCAG
TCACGATATTTTCTCTAGCGACAAATGAGATGTGGCGGTCAGGGGAGAGTGAAACATACCAAATGGGTGATGTCAGTCAA
AAGACAACGTGGCACAGAATATCAGTATTCCGACCAGGTCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGTCCCG
AATTTATGTAGAAGGGAAAGTAGACTATGGTGAATACACAGACAAAAATAATGTGAGGCGACAAGCAACAACAATCATAG
CTGATAACATTATATTTCTGAGTGACCAGACCAAAGAGAAGGCATAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 7 .94 RPM
SRP017611_brain 9 .21 RPM
SRP017611_kidney 10 .30 RPM
SRP017611_liver 3 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015145 ortholog_one2one 3 retrogenes
retro_amel_1415, retro_amel_171, retro_amel_494,
Bos taurus ENSBTAG00000010931 ortholog_one2one 2 retrogenes
retro_btau_1711, retro_btau_1838,
Callithrix jacchus ENSCJAG00000013650 ortholog_one2one 3 retrogenes
retro_cjac_1951, retro_cjac_3242, retro_cjac_669,
Cavia porcellus ENSCPOG00000003354 ortholog_one2one 1 retrogene
retro_cpor_940,
Dasypus novemcinctus ENSDNOG00000015867 ortholog_one2one 15 retrogenes
retro_dnov_1050, retro_dnov_1101, retro_dnov_1242, retro_dnov_1506, retro_dnov_1517, retro_dnov_1929, retro_dnov_1983, retro_dnov_2059, retro_dnov_2246, retro_dnov_2428, retro_dnov_2557, retro_dnov_2631, retro_dnov_480, retro_dnov_837, retro_dnov_980,
Dipodomys ordii ENSDORG00000015161 ortholog_one2one 2 retrogenes
retro_dord_367, retro_dord_40,
Equus caballus ENSECAG00000004023 ortholog_one2one 4 retrogenes
retro_ecab_764, retro_ecab_842, retro_ecab_955, retro_ecab_956,
Erinaceus europaeus ENSEEUG00000010837 ortholog_one2one 2 retrogenes
retro_eeur_155, retro_eeur_194,
Felis catus ENSFCAG00000006568 ortholog_one2one 8 retrogenes
retro_fcat_1249, retro_fcat_1565, retro_fcat_1604, retro_fcat_1640, retro_fcat_439, retro_fcat_768, retro_fcat_802, retro_fcat_805,
Homo sapiens ENSG00000106028 ortholog_one2one 1 retrogene
retro_hsap_655,
Gorilla gorilla ENSGGOG00000009615 ortholog_one2one 3 retrogenes
retro_ggor_1762, retro_ggor_368, retro_ggor_571,
Loxodonta africana ENSLAFG00000011526 ortholog_one2one 1 retrogene
retro_lafr_753,
Myotis lucifugus ENSMLUG00000007133 ortholog_one2one 3 retrogenes
retro_mluc_1874, retro_mluc_2297, retro_mluc_2509,
Macaca mulatta ENSMMUG00000022442 ortholog_one2one 3 retrogenes
retro_mmul_1014, retro_mmul_2437, retro_mmul_662,
Mustela putorius furo ENSMPUG00000003257 ortholog_one2one 5 retrogenes
retro_mputfur_1129, retro_mputfur_1488, retro_mputfur_538, retro_mputfur_835, retro_mputfur_893,
Mus musculus ENSMUSG00000029911 ortholog_one2one 3 retrogenes
retro_mmus_2762, retro_mmus_546, retro_mmus_703,
Nomascus leucogenys ENSNLEG00000002361 ortholog_one2many 2 retrogenes
retro_nleu_2258, retro_nleu_61,
Otolemur garnettii ENSOGAG00000016661 ortholog_one2one 9 retrogenes
retro_ogar_1021, retro_ogar_1085, retro_ogar_1729, retro_ogar_1806, retro_ogar_1958, retro_ogar_2345, retro_ogar_2572, retro_ogar_3020, retro_ogar_757,
Procavia capensis ENSPCAG00000003383 ortholog_one2one 1 retrogene
retro_pcap_371,
Pongo abelii ENSPPYG00000018068 ortholog_one2one 4 retrogenes
retro_pabe_2103, retro_pabe_490, retro_pabe_578, retro_pabe_661,
Pan troglodytes ENSPTRG00000019778 ortholog_one2one 3 retrogenes
retro_ptro_132, retro_ptro_1695, retro_ptro_476,
Pteropus vampyrus ENSPVAG00000006221 ortholog_one2one 2 retrogenes
retro_pvam_493, retro_pvam_525,
Rattus norvegicus ENSRNOG00000012100 ortholog_one2one 4 retrogenes
retro_rnor_1758, retro_rnor_2001, retro_rnor_2631, retro_rnor_915,
Sus scrofa ENSSSCG00000016488 ortholog_one2one 3 retrogenes
retro_sscr_1099, retro_sscr_658, retro_sscr_915,
Ictidomys tridecemlineatus ENSSTOG00000007007 ortholog_one2one 4 retrogenes
retro_itri_1307, retro_itri_1481, retro_itri_1490, retro_itri_902,
Vicugna pacos ENSVPAG00000003679 ortholog_one2one 1 retrogene
retro_vpac_71,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_303 64.67 99.32
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2. retro_cfam_308 63.75 53.38
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3. retro_cfam_470 69.49 78.38
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4. retro_cfam_782 100.00 100.00
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5. retro_cfam_1286 91.36 54.73
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6. retro_cfam_2013 63.95 97.97
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7. retro_cfam_2040 100.00 100.00
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Download FASTA sequences of all ENSCAFG00000003885 retrocopies