RetrogeneDB ID: | retro_itri_902 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393341.1:1002939..1003340(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSSTOG00000007007 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 58.52 % |
Parental protein coverage: | 90.91 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | RRPVLQVLHQFVRHESEVASSFVLER--SLNRVQLLGRVGQDPVLRQAEGKNPVTIFSLATNE-MWRSGE |
.R.VL.V..QFVRHESE.ASS....R...L.....L...GQDPV.R..EG.NPVTIFSLA....M..SG. | |
Retrocopy | QRTVLHVHYQFVRHESERASSRFFRRFQNLPVCSHLNKWGQDPVQR*PEG*NPVTIFSLAXXXXM*QSGD |
Parental | SEEYQMGDISQKTTWHRISVFRPGLRDVAYQYVKKGSRIYV-EGK-IDYGEYMDKNNVRRQATTI |
SE..QM..ISQKT.WHRISVF.PGLRDVAYQYVK.G.......GK..D.G..M.K.NV..QA.TI | |
Retrocopy | SEV*QMDNISQKTIWHRISVFWPGLRDVAYQYVKRGGLKFMWKGK<VDCGV*MNKHNVLQQAITI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |