RetrogeneDB ID: | retro_ecab_956 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 7:47171718..47172150(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSBP1 | ||
Ensembl ID: | ENSECAG00000004023 | ||
Aliases: | None | ||
Description: | single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317] |
Percent Identity: | 62.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MFRRPVLQVLHQFVRHESEIASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGES |
MF.RPV.QV.HQ.VRHES..ASSL.L..S...VQ..G.VG.DPV.RQVEGK.PVTI.SL.TNE....GES | |
Retrocopy | MFQRPV*QVPHQCVRHESLAASSLILRGSRDPVQSIG*VGEDPVLRQVEGKGPVTISSLGTNEVR*GGES |
Parental | EAYQMGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFL |
EA.QMGDVSQ..T....S..RPGL.D.A...VKKG.......K...GEY.DK.NVR.QATT..ADNI.FL | |
Retrocopy | EAQQMGDVSQDNTAQNFSI-RPGLGDMAD--VKKGLKLTWKEK*T-GEYKDKSNVR*QATTTRADNILFL |
Parental | SDQTKEKA |
.DQTKEKA | |
Retrocopy | RDQTKEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 2 .18 RPM |
SRP021940_cerebellum | 0 .05 RPM | 4 .21 RPM |
SRP021940_embryo | 0 .18 RPM | 8 .49 RPM |
SRP021940_placental_villous | 0 .00 RPM | 5 .05 RPM |
SRP021940_synovial_membrane | 0 .19 RPM | 3 .76 RPM |
SRP021940_testis | 0 .00 RPM | 2 .24 RPM |