Parental gene:

ENSCJAG00000009675

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:69886171..69892715(+)


>ENSCJAG00000009675
ATGTCCGGAGCCCTCGATGTCCTGCAAATGAAGGAGGAGGATGTCCTTAAGTTCCTGGCAGCAGGAACCCACTTAGGTGG
CACCAACCTTGACTTCCAGATGGAGCAGTATATCTATAAAAGGAAAAGTGATGGCATCTACATCATAAATCTGAAGAGGA
CCTGGGAGAAGCTTCTCCTGGCAGCTCGTGCCATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCTTCCAGG
AATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTTACTCCTGGAAC
CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTGCTTGTGGTCACTGACCCAAGGGCTGACCACCAGCCTC
TCACGGAGGCGTCTTATGTCAACCTACCTACCATTGCTCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCC
ATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTTTGCGCATGCGTGG
CACCATTTCCCGTGAACACCCGTGGGAGGTCATGCCTGATCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAAGAAG
AGCAGGCTGCTGCTGAGAAGGCTGTGACCAAGGAGGAATTTCAGGGCGAATGGACTGCTCCAGCTCCTGAGTTCACTGCT
ACTCAGCCTGAGGTTGCCGACTGGTCTGAAGGCGTGCAGGTGCCCTCTGTGCCCATCCAGCAGTTCCCTACTGAAGACTG
GAGCGCCCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCTACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGAAT
GGTCTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 150 .74 RPM
SRP051959_skeletal_muscle 118 .32 RPM
SRP051959_lymph_node 200 .13 RPM
SRP051959_lung 106 .96 RPM
SRP051959_liver 179 .07 RPM
SRP051959_kidney 95 .00 RPM
SRP051959_heart 72 .09 RPM
SRP051959_colon 153 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 possible_ortholog 13 retrogenes
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 possible_ortholog 27 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000013062 possible_ortholog 5 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000002739 possible_ortholog 22 retrogenes
Homo sapiens ENSG00000168028 possible_ortholog 2 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 possible_ortholog 32 retrogenes
Macaca mulatta ENSMMUG00000022965 ortholog_one2one 19 retrogenes
Monodelphis domestica ENSMODG00000010967 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000005626 possible_ortholog 49 retrogenes
Ochotona princeps ENSOPRG00000004505 possible_ortholog 16 retrogenes
Pan troglodytes ENSPTRG00000022841 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 possible_ortholog 2 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_53 90.37 90.85
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2. retro_cjac_305 91.23 96.61
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3. retro_cjac_732 94.58 100.00
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4. retro_cjac_958 91.28 100.00
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5. retro_cjac_1113 63.16 50.17
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6. retro_cjac_1572 89.15 99.32
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7. retro_cjac_1595 88.22 100.00
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8. retro_cjac_2265 81.08 99.66
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9. retro_cjac_2438 98.64 100.00
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10. retro_cjac_2500 92.54 100.00
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11. retro_cjac_2502 91.58 100.00
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12. retro_cjac_2750 80.74 99.66
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13. retro_cjac_2897 92.88 100.00
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14. retro_cjac_3160 89.53 100.00
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15. retro_cjac_4124 85.47 100.00
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Download FASTA sequences of all ENSCJAG00000009675 retrocopies