Parental gene:

ENSCJAG00000012417

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:132854735..132857288(+)


>ENSCJAG00000012417
CAGGCCAAACGTACCAAGAAAGTTGGGATCGTCGGTAAATACGGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAA
GAAAATTGAAATCAGCCAGCATGCCAAGTACACTTGCTCTTTCTGTGGCAAAACCAAGATGAAGAGACGAGCTGTGGGGA
TCTGGCACTGTGGTTCCTGCATGAAGACAGTGGCTGGTGGTGCCTGGACGTACAATACCACTTCCGCTGTCACGGTAAAG
TCCGCCATCAGAAGACTGAAGGAATTGAAAGACCAGTAG

Library Parental gene expression (RPM)
SRP051959_colon 55 .78 RPM
SRP051959_heart 72 .97 RPM
SRP051959_kidney 66 .85 RPM
SRP051959_liver 77 .00 RPM
SRP051959_lung 66 .71 RPM
SRP051959_lymph_node 110 .57 RPM
SRP051959_skeletal_muscle 118 .82 RPM
SRP051959_spleen 91 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003377 ortholog_one2one 24 retrogenes
retro_amel_109, retro_amel_1170, retro_amel_1197, retro_amel_1204, retro_amel_1248, retro_amel_1310, retro_amel_1349, retro_amel_1534, retro_amel_1597, retro_amel_1724, retro_amel_1815, retro_amel_1910, retro_amel_1929, retro_amel_248, retro_amel_424, retro_amel_428, retro_amel_475, retro_amel_482, retro_amel_606, retro_amel_737, retro_amel_809, retro_amel_83, retro_amel_920, retro_amel_942,
Equus caballus ENSECAG00000012046 ortholog_one2one 6 retrogenes
retro_ecab_220, retro_ecab_48, retro_ecab_552, retro_ecab_735, retro_ecab_741, retro_ecab_803,
Latimeria chalumnae ENSLACG00000011578 ortholog_one2many 1 retrogene
retro_lcha_71,
Loxodonta africana ENSLAFG00000006849 ortholog_one2one 5 retrogenes
retro_lafr_1010, retro_lafr_1015, retro_lafr_109, retro_lafr_987, retro_lafr_991,
Macropus eugenii ENSMEUG00000004680 ortholog_one2one 23 retrogenes
retro_meug_1094, retro_meug_111, retro_meug_1120, retro_meug_1289, retro_meug_1302, retro_meug_1399, retro_meug_1600, retro_meug_1705, retro_meug_2021, retro_meug_2061, retro_meug_2143, retro_meug_2173, retro_meug_24, retro_meug_290, retro_meug_458, retro_meug_463, retro_meug_496, retro_meug_502, retro_meug_571, retro_meug_691, retro_meug_813, retro_meug_814, retro_meug_83,
Myotis lucifugus ENSMLUG00000000762 ortholog_one2one 1 retrogene
retro_mluc_208,
Petromyzon marinus ENSPMAG00000000001 ortholog_one2many 1 retrogene
retro_pmar_11,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_159 97.80 98.91
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2. retro_cjac_237 95.60 98.91
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3. retro_cjac_335 94.51 98.91
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4. retro_cjac_888 73.81 90.22
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5. retro_cjac_1060 80.90 94.57
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6. retro_cjac_1514 70.31 69.57
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7. retro_cjac_3178 71.59 94.57
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Download FASTA sequences of all ENSCJAG00000012417 retrocopies