RetrogeneDB ID: | retro_ecab_735 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:117718399..117718657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000012046 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.56 % |
Parental protein coverage: | 93.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSA |
KVGIV.KY.TRYG.SLRKMVKKIEISQHA..TCSFCGKTKMKR.AVGIWHCGS..K..AGGAWT...TSA | |
Retrocopy | KVGIVSKYWTRYGTSLRKMVKKIEISQHARKTCSFCGKTKMKR*AVGIWHCGSSVKLAAGGAWTDTITSA |
Parental | VTVKSAIRRLKELKDQ |
VTVK.AI.RLKELKDQ | |
Retrocopy | VTVKLAIKRLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .12 RPM | 721 .05 RPM |
SRP021940_cerebellum | 0 .16 RPM | 396 .92 RPM |
SRP021940_embryo | 0 .59 RPM | 399 .91 RPM |
SRP021940_placental_villous | 0 .14 RPM | 333 .70 RPM |
SRP021940_synovial_membrane | 0 .14 RPM | 544 .29 RPM |
SRP021940_testis | 0 .13 RPM | 352 .52 RPM |