RetrogeneDB ID: | retro_ecab_48 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:73883950..73884157(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000003769 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000012046 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.24 % |
Parental protein coverage: | 73.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ |
MVKKIEISQHAK.TCSFCG.TKMKRRAVGIWHCGSC.KTVAG..WTYNT.SA.T.KSAIRRLKELKDQ | |
Retrocopy | MVKKIEISQHAKQTCSFCGRTKMKRRAVGIWHCGSCIKTVAGRVWTYNTSSAITLKSAIRRLKELKDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 721 .05 RPM |
SRP021940_cerebellum | 0 .00 RPM | 396 .92 RPM |
SRP021940_embryo | 0 .03 RPM | 399 .91 RPM |
SRP021940_placental_villous | 0 .10 RPM | 333 .70 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 544 .29 RPM |
SRP021940_testis | 0 .00 RPM | 352 .52 RPM |