Parental gene:

ENSCJAG00000014253

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:29515913..29527975(+)


>ENSCJAG00000014253
ATGAAGTGGATGTTCAAGGAGGACCACTCTTTGGAACACAGATGCGTGGAGTCCGCGAAGATCCGAGCGAAATATCCTGA
CCGGGTTCCGGTGATTGTGGAAAAGGTCTCAGGCTCTCAGATTGTTGACATTGACAAACGGAAGTACTTGGTTCCATCTG
ATATCACTGTGGCTCAGTTCATGTGGATCATCAGGAAAAGGATCCAGCTTCCTTCTGAAAAGGCGATCTTCCTGTTTGTG
GATAAGACAGTCCCACAGTCCAGCCTAACTATGGGACAGCTTTACGAGAAGGAAAAAGATGAAGATGGATTCTTGTATGT
GGCCTACAGCGGAGAGAACACTTTCGGCTTCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .89 RPM
SRP051959_skeletal_muscle 21 .16 RPM
SRP051959_lymph_node 12 .74 RPM
SRP051959_lung 13 .36 RPM
SRP051959_liver 9 .47 RPM
SRP051959_kidney 13 .49 RPM
SRP051959_heart 13 .12 RPM
SRP051959_colon 8 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005453 ortholog_one2many 2 retrogenes
retro_amel_1054, retro_amel_1238,
Canis familiaris ENSCAFG00000031455 ortholog_one2one 1 retrogene
retro_cfam_639,
Callithrix jacchus ENSCJAG00000004473 within_species_paralog 3 retrogenes
retro_cjac_1114, retro_cjac_1519, retro_cjac_779,
Callithrix jacchus ENSCJAG00000016655 within_species_paralog 2 retrogenes
retro_cjac_2851, retro_cjac_3820,
Dasypus novemcinctus ENSDNOG00000002240 ortholog_one2many 2 retrogenes
retro_dnov_1755, retro_dnov_2332,
Erinaceus europaeus ENSEEUG00000011134 possible_ortholog 1 retrogene
retro_eeur_337,
Homo sapiens ENSG00000034713 possible_ortholog 1 retrogene
retro_hsap_4115,
Gorilla gorilla ENSGGOG00000012299 possible_ortholog 2 retrogenes
retro_ggor_2761, retro_ggor_342,
Loxodonta africana ENSLAFG00000017065 possible_ortholog 2 retrogenes
retro_lafr_234, retro_lafr_543,
Microcebus murinus ENSMICG00000011981 ortholog_one2one 1 retrogene
retro_mmur_1473,
Myotis lucifugus ENSMLUG00000015112 possible_ortholog 1 retrogene
retro_mluc_1207,
Macaca mulatta ENSMMUG00000005759 possible_ortholog 2 retrogenes
retro_mmul_2369, retro_mmul_540,
Mustela putorius furo ENSMPUG00000009894 ortholog_one2one 1 retrogene
retro_mputfur_993,
Mus musculus ENSMUSG00000031950 ortholog_one2one 5 retrogenes
retro_mmus_2637, retro_mmus_2655, retro_mmus_3240, retro_mmus_456, retro_mmus_506,
Nomascus leucogenys ENSNLEG00000013048 possible_ortholog 2 retrogenes
retro_nleu_1560, retro_nleu_580,
Pongo abelii ENSPPYG00000007565 possible_ortholog 2 retrogenes
retro_pabe_3368, retro_pabe_372,
Pan troglodytes ENSPTRG00000008362 possible_ortholog 2 retrogenes
retro_ptro_250, retro_ptro_2794,
Rattus norvegicus ENSRNOG00000019425 possible_ortholog 1 retrogene
retro_rnor_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_146 99.15 100.00
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Download FASTA sequences of all ENSCJAG00000014253 retrocopies