Parental gene:

GABARAP, ENSCJAG00000016655

Aliases:None
Description:GABA(A) receptor-associated protein [Source:HGNC Symbol;Acc:4067]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:74627680..74629709(+)


>ENSCJAG00000016655
ATGAAGTTCGTGTACAAAGAAGAGCATCCATTCGAGAAGCGCCGCTCTGAGGGCGAGAAGATCCGAAAGAAATACCCGGA
CCGGGTGCCGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATACCTGGTGCCTTCTG
ATCTCACAGTTGGTCAGTTCTACTTCTTGATCCGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTC
AACAATGTCATTCCACCCACCAGTGCCACAATGGGTCAACTTTACCAGGAACACCATGAAGAAGACTTCTTTCTGTACAT
TGCCTATAGTGACGAAAGTGTCTACGGTCTGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 18 .57 RPM
SRP051959_skeletal_muscle 28 .48 RPM
SRP051959_lymph_node 10 .23 RPM
SRP051959_lung 15 .26 RPM
SRP051959_liver 14 .06 RPM
SRP051959_kidney 19 .44 RPM
SRP051959_heart 17 .10 RPM
SRP051959_colon 11 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000012473 ortholog_one2one 1 retrogene
retro_cint_25,
Callithrix jacchus ENSCJAG00000004473 within_species_paralog 3 retrogenes
retro_cjac_1114, retro_cjac_1519, retro_cjac_779,
Callithrix jacchus ENSCJAG00000014253 within_species_paralog 1 retrogene
retro_cjac_146,
Gorilla gorilla ENSGGOG00000013770 ortholog_one2one 1 retrogene
retro_ggor_821,
Loxodonta africana ENSLAFG00000000744 possible_ortholog 1 retrogene
retro_lafr_61,
Macaca mulatta ENSMMUG00000010545 ortholog_one2many 1 retrogene
retro_mmul_155,
Mus musculus ENSMUSG00000018567 ortholog_one2one 1 retrogene
retro_mmus_3107,
Nomascus leucogenys ENSNLEG00000008049 ortholog_one2one 2 retrogenes
retro_nleu_1670, retro_nleu_4,
Oryctolagus cuniculus ENSOCUG00000006997 ortholog_one2one 1 retrogene
retro_ocun_311,
Pongo abelii ENSPPYG00000007901 ortholog_one2one 1 retrogene
retro_pabe_122,
Pan troglodytes ENSPTRG00000034115 ortholog_one2one 1 retrogene
retro_ptro_60,
Rattus norvegicus ENSRNOG00000017417 ortholog_one2one 2 retrogenes
retro_rnor_1818, retro_rnor_2093,
Sus scrofa ENSSSCG00000017936 possible_ortholog 1 retrogene
retro_sscr_163,
Drosophila melanogaster FBgn0052672 ortholog_one2many 1 retrogene
retro_dmel_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2851 97.44 100.00
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2. retro_cjac_3820 88.89 100.00
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Download FASTA sequences of all ENSCJAG00000016655 retrocopies