Parental gene:

TUBA1B, ENSCJAG00000020874

Aliases:None
Description:tubulin, alpha 1b [Source:HGNC Symbol;Acc:18809]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:37909115..37913542(-)


>ENSCJAG00000020874
ATGCGTGAGTGCATCTCCATACACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACGGGTGCTGGCAAGCACGTGCCCCGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAACAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATCGGCAAGGAGATCATTGACCTCGTGTTGGACCGAATTCGTAAACTGGCTGACCAGTGCACCGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTCATGGAACGGCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCGGCGCCCCAGGTTTCCACGGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACTAATCTTAACCGCCTTATTAGCCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTGGCCAAGGTACAGAGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGGATGGAGGAAGGAGAGTTTTCAGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGCGAAGAATACTAA

Library Parental gene expression (RPM)
SRP051959_colon 127 .13 RPM
SRP051959_heart 89 .60 RPM
SRP051959_kidney 55 .67 RPM
SRP051959_liver 43 .93 RPM
SRP051959_lung 84 .92 RPM
SRP051959_lymph_node 68 .26 RPM
SRP051959_skeletal_muscle 29 .35 RPM
SRP051959_spleen 80 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012244 ortholog_one2one 1 retrogene
retro_btau_402,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Callithrix jacchus ENSCJAG00000020894 within_species_paralog 2 retrogenes
retro_cjac_1209, retro_cjac_3157,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Homo sapiens ENSG00000123416 ortholog_one2one 1 retrogene
retro_hsap_808,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Macropus eugenii ENSMEUG00000011167 ortholog_one2one 4 retrogenes
retro_meug_1121, retro_meug_157, retro_meug_1616, retro_meug_1964,
Monodelphis domestica ENSMODG00000015206 ortholog_one2one 2 retrogenes
retro_mdom_1632, retro_mdom_348,
Mus musculus ENSMUSG00000023004 ortholog_one2one 6 retrogenes
retro_mmus_1562, retro_mmus_1607, retro_mmus_1742, retro_mmus_1987, retro_mmus_3297, retro_mmus_3327,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pan troglodytes ENSPTRG00000012950 ortholog_one2one 1 retrogene
retro_ptro_2158,
Sus scrofa ENSSSCG00000000190 ortholog_one2one 2 retrogenes
retro_sscr_380, retro_sscr_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1603 92.97 97.78
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2. retro_cjac_1861 76.25 92.24
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Download FASTA sequences of all ENSCJAG00000020874 retrocopies