Parental gene: | TUBA1B, ENSCJAG00000020874 |
| Aliases: | None |
| Description: | tubulin, alpha 1b [Source:HGNC Symbol;Acc:18809] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:37909115..37913542(-) |
>ENSCJAG00000020874
ATGCGTGAGTGCATCTCCATACACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACGGGTGCTGGCAAGCACGTGCCCCGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAACAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATCGGCAAGGAGATCATTGACCTCGTGTTGGACCGAATTCGTAAACTGGCTGACCAGTGCACCGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTCATGGAACGGCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCGGCGCCCCAGGTTTCCACGGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACTAATCTTAACCGCCTTATTAGCCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTGGCCAAGGTACAGAGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGGATGGAGGAAGGAGAGTTTTCAGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGCGAAGAATACTAA
ATGCGTGAGTGCATCTCCATACACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACGGGTGCTGGCAAGCACGTGCCCCGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAACAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATCGGCAAGGAGATCATTGACCTCGTGTTGGACCGAATTCGTAAACTGGCTGACCAGTGCACCGGTCTCCAGG
GCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTCATGGAACGGCTCTCAGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCGGCGCCCCAGGTTTCCACGGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACTAATCTTAACCGCCTTATTAGCCAAATTGTGTCCTCCATCACTGCT
TCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTGGCCAAGGTACAGAGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTACGTGGGTGAGGGGATGGAGGAAGGAGAGTTTTCAGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGCGAAGAATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 80 .69 RPM |
| SRP051959_skeletal_muscle | 29 .35 RPM |
| SRP051959_lymph_node | 68 .26 RPM |
| SRP051959_lung | 84 .92 RPM |
| SRP051959_liver | 43 .93 RPM |
| SRP051959_kidney | 55 .67 RPM |
| SRP051959_heart | 89 .60 RPM |
| SRP051959_colon | 127 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012244 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008444 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020894 | within_species_paralog | 2 retrogenes | |
| Felis catus | ENSFCAG00000028689 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000123416 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010779 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000011167 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000015206 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000023004 | ortholog_one2one | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009435 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012950 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000000190 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1603 | 92.97 | 97.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1861 | 76.25 | 92.24 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020874 retrocopies