RetrogeneDB ID: | retro_fcat_798 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:130282283..130283627(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000028689 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.72 % |
Parental protein coverage: | 99.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
ECISIH.GQAGVQI.N.CWELY.LEHGIQPDGQMPSD.TIGGGDDSFNTFFSET.AGKHVPRAVFVDLEP | |
Retrocopy | ECISIHIGQAGVQISNTCWELYSLEHGIQPDGQMPSDNTIGGGDDSFNTFFSETDAGKHVPRAVFVDLEP |
Parental | TVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFG |
TVIDEVRTGTY.QLFHPEQLITGKED.ANNYA.GHYTIGKEIIDLVL.RIRKLA.Q..GLQGFLVFHSFG | |
Retrocopy | TVIDEVRTGTYCQLFHPEQLITGKEDSANNYAQGHYTIGKEIIDLVLNRIRKLAAQSMGLQGFLVFHSFG |
Parental | GGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI |
GGTGS.F..LL.E.L.V.YGKK.KLEFSIYPAPQVSTAVVEPYNSIL.THTTLEHSD.AFMVDNEAIYDI | |
Retrocopy | GGTGSRFIPLLIECLFVNYGKKPKLEFSIYPAPQVSTAVVEPYNSILSTHTTLEHSDYAFMVDNEAIYDI |
Parental | CRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL-VPYP-RIHFPLATYAPVISAEK |
C.RNLDIER.TYTNLNRLI.QI.SSITASL.FDGALNVDLTEFQTNL.VPYP..IHFPLATYAPVI.AEK | |
Retrocopy | CGRNLDIER*TYTNLNRLICQIMSSITASLIFDGALNVDLTEFQTNL<VPYP<PIHFPLATYAPVIYAEK |
Parental | AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG |
AYHE.LSVAEITN.CFE.ANQMVKCDPRHG.YMA.CLLY.GDVVPKDVNAAIATIKTKRTIQFVDWCPTG | |
Retrocopy | AYHELLSVAEITNECFESANQMVKCDPRHGRYMASCLLYHGDVVPKDVNAAIATIKTKRTIQFVDWCPTG |
Parental | FKVGINYQPPTVVP-GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS |
FKVG.NY.PPTVVP..GDLA.VQRAVC.LSNTTAIAEAW..LDH..D.MYAKRAFVHW.VGEGMEEGEFS | |
Retrocopy | FKVGVNY*PPTVVP<YGDLARVQRAVCVLSNTTAIAEAWVLLDHQLDQMYAKRAFVHWHVGEGMEEGEFS |
Parental | EAREDMAALEKDYEEVGVDSVEGEGEEEGEEY |
EAREDMAALEKDYEEVGVDSVEGEGE.EGEEY | |
Retrocopy | EAREDMAALEKDYEEVGVDSVEGEGEGEGEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 271 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .62 RPM |
SRP017611_liver | 0 .00 RPM | 7 .08 RPM |