RetrogeneDB ID: | retro_chof_360 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_966:30145..31332(-) | ||
Located in intron of: | ENSCHOG00000010382 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000008444 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.08 % |
Parental protein coverage: | 89.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTI |
T.G.GDD..........A.....RAVFVDLEPTVID.V.TGTY.QLFHP.QLITGKEDAANNYA..HYT. | |
Retrocopy | TNGRGDD---SSLRQAPASIYPGRAVFVDLEPTVIDKVCTGTYCQLFHPVQLITGKEDAANNYACRHYTT |
Parental | GKEIIDLVLDRIRKLADQCTGLQGFLVFHSF-GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST |
GKE.IDL.LDRIRKL.DQ.TGLQGFLVFH.F..GGTGS.FTSLLME.L.VDYGK.SKLEFSIY.APQVST | |
Retrocopy | GKELIDLFLDRIRKLTDQNTGLQGFLVFHHF>WGGTGSQFTSLLMECLFVDYGK-SKLEFSIYAAPQVST |
Parental | AVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS-ITASLRFDGAL |
AVV.PYN.ILT.HTT...SDCAF.VDN.A..DIC.RNLDI..PTYTNLNRLIGQI.SS.ITASLRFDGAL | |
Retrocopy | AVVKPYNFILT-HTTQKQSDCAFVVDNKATHDICSRNLDIKHPTYTNLNRLIGQIESS<ITASLRFDGAL |
Parental | NVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLL |
NVDLTEFQTNLVPYP.IHFPLATYAPVIS.EK.YHEQLS.AEIT.ACFEPANQMVKCDP.HGKYMACCLL | |
Retrocopy | NVDLTEFQTNLVPYPDIHFPLATYAPVISGEKTYHEQLSGAEITSACFEPANQMVKCDPHHGKYMACCLL |
Parental | YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAW |
Y.G..VPKD.NAAIA.IKTK.TI.FV.WCPTGFKV.INYQPPTVVP.GDLAK.Q.AVCML.N......AW | |
Retrocopy | YHGNTVPKDSNAAIAIIKTKCTILFVNWCPTGFKVSINYQPPTVVP-GDLAKDQQAVCMLINHRC-CQAW |
Parental | ARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE-VGVDSVEGE |
A.LDHKFDLM.AK.AF.HWYVGEGMEEGEFSE..E.MAALE...EE.VGV.SVEG. | |
Retrocopy | ACLDHKFDLMHAKHAFAHWYVGEGMEEGEFSETHESMAALEEHCEE<VGVNSVEGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |