RetrogeneDB ID: | retro_fcat_1802 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:17730720..17731903(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000028689 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.36 % |
Parental protein coverage: | 89.33 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 10 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
E.ISIHVG.AGVQ.GNACWELYCL.HG.Q.DGQMPSDKT.GG..DS.NTFFSETGAGKHV.RAVFVDL.P | |
Retrocopy | EYISIHVGHAGVQTGNACWELYCLAHGNQLDGQMPSDKTTGGREDS-NTFFSETGAGKHVSRAVFVDLKP |
Parental | TVIDEVRTGTYR-QLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQ-GFLVFHS |
.VI....TGTY..QLFHPEQ.ITGK..AA.NY..GH.T.GKEI.DLV.D.I.KLA.Q.T.LQ.G.L.F.. | |
Retrocopy | IVIGKAGTGTYP>QLFHPEQFITGKNKAAYNYT*GH*TSGKEITDLVFD*IWKLAGQWTCLQ<GLLGFPQ |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIY-PAPQVSTAVVEPYNSILTTHTT-LEHSDCAFMVDNEA |
...G.......L.....S..YGKK.KL.F.IY.P.P....AVVEPYN..LTTHTT.LEHSD.AFMVDNEA | |
Retrocopy | LQSGN*L-WVHLPADGMSLYYGKKCKLDFFIY<PSPR---AVVEPYNFLLTTHTT<LEHSDYAFMVDNEA |
Parental | IYDICRRNLDIER-PTYTNL-NRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH-FP-LATYAP |
IYDIC.RN..IE..P...NL..RL.GQI.SSITASLR.DGALNVDLTEFQ.NLVPYP.IH.FP.L....P | |
Retrocopy | IYDICHRNFGIEH<PNIHNL<GRLVGQIGSSITASLRIDGALNVDLTEFQINLVPYPQIH<FP<LWSHMP |
Parental | VISAEKAYHEQLSVAEITNACFE-PANQMVKCDPRHGKYMACCLLYRGDVVPK-DVNAAIATIKTKRTIQ |
.IS.EKAYHEQLSVAEIT.ACFE..A..M.KCD..HGKYM...L.Y.G.VVPK.DVN.AIATIKTK.TIQ | |
Retrocopy | IISVEKAYHEQLSVAEITTACFE<VAKKMEKCDSHHGKYMV*YL*YCGNVVPK<DVNGAIATIKTKYTIQ |
Parental | FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF |
FVD..PT.F.VGINYQPPTVVPG.DL.KVQ.AVCMLSNTTAIAEAW..LDHKFDLMYAKRAF | |
Retrocopy | FVD*YPTDFQVGINYQPPTVVPGEDLSKVQ*AVCMLSNTTAIAEAWVPLDHKFDLMYAKRAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 271 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .62 RPM |
SRP017611_liver | 0 .00 RPM | 7 .08 RPM |