RetrogeneDB ID: | retro_fcat_254 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:124945043..124946383(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000028689 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.48 % |
Parental protein coverage: | 99.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE |
RECISIH.GQAGVQIGNACWELYCLEHG.QPDGQMPSDKT.GGGDDSFNTFFSETG.GKHVPRAVFVDLE | |
Retrocopy | RECISIHAGQAGVQIGNACWELYCLEHGFQPDGQMPSDKTVGGGDDSFNTFFSETGTGKHVPRAVFVDLE |
Parental | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIR-KLADQCTGLQGFLVFHS |
PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA.GHYT.GKEIIDLVLD....KLADQC.GLQGFL.FHS | |
Retrocopy | PTVIDEVRTGTYRQLFHPEQLITGKEDAANNYA*GHYTVGKEIIDLVLD*TQ<KLADQCMGLQGFLFFHS |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
FGGGTGSGFTSLLME...VDYGKKSKLEFSIYPAPQVST.VVEPYNSILTTHTTLEHSDCAFMVDNEAIY | |
Retrocopy | FGGGTGSGFTSLLMEHFFVDYGKKSKLEFSIYPAPQVST-VVEPYNSILTTHTTLEHSDCAFMVDNEAIY |
Parental | DICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTE-FQTNLVPYPRIHFPLATYAPVISAE |
DI.RR.LDIERPTYTNL.RLIGQIVSSITASLRFDGALNVDLTE..QTNLVPYP.IHFPLATYAPVISAE | |
Retrocopy | DIRRRSLDIERPTYTNLYRLIGQIVSSITASLRFDGALNVDLTE<IQTNLVPYPCIHFPLATYAPVISAE |
Parental | KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT |
K.YHEQLSVAEITNA.FEPANQMVKCDP.HGKYMACCLLY.GDVVPKDV.AAIATIKTKRTIQFVDWCPT | |
Retrocopy | KGYHEQLSVAEITNASFEPANQMVKCDPFHGKYMACCLLYCGDVVPKDVSAAIATIKTKRTIQFVDWCPT |
Parental | GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE-GEF |
GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT.AIAEAWARLDHKFDLMYAKRAFVHWYVGEGM.E...F | |
Retrocopy | GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTAAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMQE>RKF |
Parental | SEAREDMAALEKDYEEVGVDSVEGEGEEEGEE |
SEA.EDMAALE.DYEEVGVDSVEGEGEEEGEE | |
Retrocopy | SEAHEDMAALE-DYEEVGVDSVEGEGEEEGEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 271 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .62 RPM |
SRP017611_liver | 0 .20 RPM | 7 .08 RPM |