Parental gene:

TUBA1B, ENSMODG00000015206

Aliases:None
Description:tubulin, alpha 1b [Source:HGNC Symbol;Acc:18809]
Organism:Opossum (Monodelphis domestica)
Coordinates:Un:36666523..36675277(-)


>ENSMODG00000015206
ATGCGTGAGTGCATCTCTATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTGTACTGCCTGGA
ACATGGTATCCAGCCTGATGGGCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAAACGGGGGCTGGCAAGCATGTCCCCAGAGCAGTGTTTGTAGATCTGGAACCAACTGTCATTGATGAAGTTCGTACT
GGAACTTACCGCCAGCTCTTCCATCCTGAACAGCTGATCACTGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGGCA
CTACACTATTGGCAAGGAAATCATCGACCTTGTTCTAGACAGGATTCGGAAACTGGCGGATCAGTGCACAGGTCTTCAAG
GCTTCTTGGTTTTCCACAGCTTTGGTGGTGGGACTGGCTCTGGTTTCACCTCTCTGCTGATGGAAAGGCTGTCTGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCACAGGTTTCCACTGCTGTGGTTGAGCCCTACAACTC
CATTCTGACCACTCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCTATCTATGATATCTGTC
GCAGAAACCTTGATATCGAACGTCCAACCTACACTAATCTAAATCGCCTTATTAGTCAAATTGTGTCCTCCATCACTGCC
TCTCTGAGATTTGATGGTGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACTTGGTGCCCTACCCCCGAATCCATTT
CCCCCTGGCCACATATGCCCCAGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCTGCCAACCAGATGGTGAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGGGATGTGGTGCCCAAAGATGTCAATGCCGCCATTGCTACCATCAAGACAAAGCGAAGCATCCAGTTTGTGGATTGGTG
CCCAACTGGCTTCAAGGTTGGCATCAATTACCAGCCTCCCACTGTGGTTCCCGGTGGTGACCTGGCCAAGGTACAGAGGG
CTGTGTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGGGAGGGCATGGAGGAAGGAGAGTTCTCTGAGGCACGGGAGGATATGGCAGC
CCTGGAGAAGGATTATGAGGAGGTTGGGGTGGATTCTGTTGAAGGAGAGGGTGAAGAGGAAGGAGAAGAGTATTAG

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012244 ortholog_one2one 1 retrogene
retro_btau_402,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Callithrix jacchus ENSCJAG00000020874 ortholog_one2one 2 retrogenes
retro_cjac_1603, retro_cjac_1861,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Homo sapiens ENSG00000123416 ortholog_one2one 1 retrogene
retro_hsap_808,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Macropus eugenii ENSMEUG00000011167 ortholog_one2one 4 retrogenes
retro_meug_1121, retro_meug_157, retro_meug_1616, retro_meug_1964,
Monodelphis domestica ENSMODG00000023336 within_species_paralog 1 retrogene
retro_mdom_973,
Mus musculus ENSMUSG00000023004 ortholog_one2one 6 retrogenes
retro_mmus_1562, retro_mmus_1607, retro_mmus_1742, retro_mmus_1987, retro_mmus_3297, retro_mmus_3327,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pan troglodytes ENSPTRG00000012950 ortholog_one2one 1 retrogene
retro_ptro_2158,
Sus scrofa ENSSSCG00000000190 ortholog_one2one 2 retrogenes
retro_sscr_380, retro_sscr_702,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_348 90.28 70.51
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2. retro_mdom_1632 93.14 100.00
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Download FASTA sequences of all ENSMODG00000015206 retrocopies