Parental gene: | TUBA1B, ENSMODG00000015206 |
| Aliases: | None |
| Description: | tubulin, alpha 1b [Source:HGNC Symbol;Acc:18809] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | Un:36666523..36675277(-) |
>ENSMODG00000015206
ATGCGTGAGTGCATCTCTATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTGTACTGCCTGGA
ACATGGTATCCAGCCTGATGGGCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAAACGGGGGCTGGCAAGCATGTCCCCAGAGCAGTGTTTGTAGATCTGGAACCAACTGTCATTGATGAAGTTCGTACT
GGAACTTACCGCCAGCTCTTCCATCCTGAACAGCTGATCACTGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGGCA
CTACACTATTGGCAAGGAAATCATCGACCTTGTTCTAGACAGGATTCGGAAACTGGCGGATCAGTGCACAGGTCTTCAAG
GCTTCTTGGTTTTCCACAGCTTTGGTGGTGGGACTGGCTCTGGTTTCACCTCTCTGCTGATGGAAAGGCTGTCTGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCACAGGTTTCCACTGCTGTGGTTGAGCCCTACAACTC
CATTCTGACCACTCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCTATCTATGATATCTGTC
GCAGAAACCTTGATATCGAACGTCCAACCTACACTAATCTAAATCGCCTTATTAGTCAAATTGTGTCCTCCATCACTGCC
TCTCTGAGATTTGATGGTGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACTTGGTGCCCTACCCCCGAATCCATTT
CCCCCTGGCCACATATGCCCCAGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCTGCCAACCAGATGGTGAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGGGATGTGGTGCCCAAAGATGTCAATGCCGCCATTGCTACCATCAAGACAAAGCGAAGCATCCAGTTTGTGGATTGGTG
CCCAACTGGCTTCAAGGTTGGCATCAATTACCAGCCTCCCACTGTGGTTCCCGGTGGTGACCTGGCCAAGGTACAGAGGG
CTGTGTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGGGAGGGCATGGAGGAAGGAGAGTTCTCTGAGGCACGGGAGGATATGGCAGC
CCTGGAGAAGGATTATGAGGAGGTTGGGGTGGATTCTGTTGAAGGAGAGGGTGAAGAGGAAGGAGAAGAGTATTAG
ATGCGTGAGTGCATCTCTATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTGTACTGCCTGGA
ACATGGTATCCAGCCTGATGGGCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAAACGGGGGCTGGCAAGCATGTCCCCAGAGCAGTGTTTGTAGATCTGGAACCAACTGTCATTGATGAAGTTCGTACT
GGAACTTACCGCCAGCTCTTCCATCCTGAACAGCTGATCACTGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGGCA
CTACACTATTGGCAAGGAAATCATCGACCTTGTTCTAGACAGGATTCGGAAACTGGCGGATCAGTGCACAGGTCTTCAAG
GCTTCTTGGTTTTCCACAGCTTTGGTGGTGGGACTGGCTCTGGTTTCACCTCTCTGCTGATGGAAAGGCTGTCTGTTGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCACAGGTTTCCACTGCTGTGGTTGAGCCCTACAACTC
CATTCTGACCACTCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCTATCTATGATATCTGTC
GCAGAAACCTTGATATCGAACGTCCAACCTACACTAATCTAAATCGCCTTATTAGTCAAATTGTGTCCTCCATCACTGCC
TCTCTGAGATTTGATGGTGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACTTGGTGCCCTACCCCCGAATCCATTT
CCCCCTGGCCACATATGCCCCAGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATG
CTTGCTTTGAGCCTGCCAACCAGATGGTGAAATGTGACCCTCGCCACGGTAAATACATGGCTTGCTGCCTGCTGTACCGT
GGGGATGTGGTGCCCAAAGATGTCAATGCCGCCATTGCTACCATCAAGACAAAGCGAAGCATCCAGTTTGTGGATTGGTG
CCCAACTGGCTTCAAGGTTGGCATCAATTACCAGCCTCCCACTGTGGTTCCCGGTGGTGACCTGGCCAAGGTACAGAGGG
CTGTGTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGATCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGGGAGGGCATGGAGGAAGGAGAGTTCTCTGAGGCACGGGAGGATATGGCAGC
CCTGGAGAAGGATTATGAGGAGGTTGGGGTGGATTCTGTTGAAGGAGAGGGTGAAGAGGAAGGAGAAGAGTATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012244 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008444 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020874 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000028689 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000123416 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010779 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000011167 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000023336 | within_species_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000023004 | ortholog_one2one | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009435 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012950 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000000190 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_348 | 90.28 | 70.51 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1632 | 93.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000015206 retrocopies