Parental gene: | ENSCJAG00000033635 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:8953140..8959057(+) |
>ENSCJAG00000033635
ATGTCGCACAAACAAATTTACTATTCGGACAAATACGACGACGAGGAGTTTGAGTATCGGCATGTCATGCTGCCCAAGGA
CATAGCCAAGCTGGTCCCTAAAACCCATTTGATGTCTGAATCTGAATGGAGGAATCTTGGTGTTCAACAGAGTCAGGGTT
GGGTCCATTATATGATCCATGAACCAGAACCTCACATCTTACTGTTCCGGCGCCCACTACCCAAGAAGCCGAAGAAATGA
ATGTCGCACAAACAAATTTACTATTCGGACAAATACGACGACGAGGAGTTTGAGTATCGGCATGTCATGCTGCCCAAGGA
CATAGCCAAGCTGGTCCCTAAAACCCATTTGATGTCTGAATCTGAATGGAGGAATCTTGGTGTTCAACAGAGTCAGGGTT
GGGTCCATTATATGATCCATGAACCAGAACCTCACATCTTACTGTTCCGGCGCCCACTACCCAAGAAGCCGAAGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 4 .92 RPM |
| SRP051959_skeletal_muscle | 0 .50 RPM |
| SRP051959_lymph_node | 2 .42 RPM |
| SRP051959_lung | 1 .64 RPM |
| SRP051959_liver | 3 .44 RPM |
| SRP051959_kidney | 1 .73 RPM |
| SRP051959_heart | 2 .19 RPM |
| SRP051959_colon | 5 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007792 | within_species_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000024061 | possible_ortholog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000003764 | possible_ortholog | 6 retrogenes | |
| Equus caballus | ENSECAG00000003460 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000015895 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000003337 | ortholog_one2many | 4 retrogenes | |
| Felis catus | ENSFCAG00000001347 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000173207 | ortholog_many2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013419 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000032213 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002408 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000028044 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011532 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016204 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000006384 | possible_ortholog | 10 retrogenes | |
| Rattus norvegicus | ENSRNOG00000042561 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000012383 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000004796 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000029737 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000012182 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_13 | 88.61 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_57 | 91.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_276 | 76.92 | 98.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_876 | 87.34 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1441 | 96.20 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1478 | 87.34 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_1779 | 79.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2040 | 76.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_2212 | 81.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_2649 | 92.41 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000033635 retrocopies