RetrogeneDB ID: | retro_cpor_434 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_15:22361201..22361643(-) | ||
Located in intron of: | ENSCPOG00000008020 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCPOG00000020285 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.41 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRL |
.LLEKFL.P.ASQAESKVFYLKMK.DYY..LA.VAAGDDKKG.V.QSQQAYQEAFEISKKE.QP..PIRL | |
Retrocopy | TLLEKFLVPSASQAESKVFYLKMKRDYYSCLAKVAAGDDKKGMVNQSQQAYQEAFEISKKEIQPLRPIRL |
Parental | GLALNFSVFYYEILNSPEKACSLAKT-AFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEA |
GLAL.FSV.YYEILNSPEKACSL.KT...DEAIAELDTLSEE...DS.LI.QLLRDNLTL.TS...GDEA | |
Retrocopy | GLALSFSVLYYEILNSPEKACSLTKT>IDDEAIAELDTLSEEA*QDSMLIVQLLRDNLTL*TSES*GDEA |
Parental | EAGEGGEN |
E.G.GGEN | |
Retrocopy | ETGKGGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 310 .76 RPM |
SRP017611_kidney | 0 .10 RPM | 57 .89 RPM |
SRP017611_liver | 0 .00 RPM | 21 .33 RPM |
SRP040447_lung | 0 .00 RPM | 92 .13 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 17 .82 RPM |