Parental gene:

YWHAE, ENSCPOG00000008007

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_32:21013811..21031386(+)


>ENSCPOG00000008007
CTTTCACATGCTCTTGAATTTATATTCTTTGGTCTGCTAGGGTATCAAGCTTTTTCTCATTTAGAAATGGTTGAATCAAT
GAAGAAAGTAGCAGGAATGGATGTGGAGCTGACGGTTGAAGAAAGAAACCTCCTATCTGTTGCATATAAAAATGTGATTG
GAGCTAGAAGAGCCTCCTGGAGAATAATCAGCAGCATTGAACAGAAAGAAGAAAACAAGGGAGGAGAAGATAAACTAAAA
ATGATTCGAGAATATCGGCAAATGGTTGAGACTGAGCTAAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACA
CCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTTTCTATTATAAAATGAAAGGGGACTACCACAGGTATCTGGCTG
AATTTGCCACAGGAAATGACAGGAAGGAGGCTGCAGAGAACAGCCTAGTGGCTTATAAAGCTGCTAGTGATATTGCAATG
ACAGAACTTCCACCAACGCATCCTATTCGTTTAGGTCTTGCTCTCAACTTTTCCGTATTCTACTATGAAATTCTTAATTC
CCCTGACCGTGCCTGCAGGTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGATACACTGAGTGAAGAAAGCT
ATAAGGACTCTACACTTATCATGCAATTGTTACGTGATAATCTGACACTATGGACTTCAGACATGCAGGGTGACGGTGAA
GAGCAGAATAAAGAAGCGCTGCAGGATGTGGAAGATGAAAATCAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 88 .75 RPM
SRP017611_kidney 148 .45 RPM
SRP017611_brain 254 .74 RPM
SRP040447_lung 117 .15 RPM
SRP040447_skeletal_muscle 155 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010861 possible_ortholog 2 retrogenes
retro_chof_1912, retro_chof_905,
Ciona intestinalis ENSCING00000023856 ortholog_one2many 1 retrogene
retro_cint_15,
Cavia porcellus ENSCPOG00000011321 other_paralog 4 retrogenes
retro_cpor_135, retro_cpor_1463, retro_cpor_616, retro_cpor_668,
Cavia porcellus ENSCPOG00000020285 other_paralog 5 retrogenes
retro_cpor_220, retro_cpor_323, retro_cpor_434, retro_cpor_592, retro_cpor_644,
Ciona savignyi ENSCSAVG00000011723 ortholog_one2one 2 retrogenes
retro_csav_13, retro_csav_9,
Echinops telfairi ENSETEG00000012056 possible_ortholog 2 retrogenes
retro_etel_1762, retro_etel_738,
Felis catus ENSFCAG00000011368 ortholog_one2one 1 retrogene
retro_fcat_1636,
Gorilla gorilla ENSGGOG00000016840 possible_ortholog 1 retrogene
retro_ggor_2596,
Oryctolagus cuniculus ENSOCUG00000014607 possible_ortholog 2 retrogenes
retro_ocun_1062, retro_ocun_1576,
Pongo abelii ENSPPYG00000007769 possible_ortholog 4 retrogenes
retro_pabe_1644, retro_pabe_1646, retro_pabe_2107, retro_pabe_3219,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_307 88.82 62.75
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Download FASTA sequences of all ENSCPOG00000008007 retrocopies