RetrogeneDB ID: | retro_cpor_323 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_124:788068..788738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCPOG00000020285 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.39 % |
Parental protein coverage: | 91.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | AACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKKQQMAREYREKIETE-LR |
AACM.SVTEQ..EL..EERNL.S.AYKNV..A..SS.RVVS...QKT.GAEK...M..EYREKIETE..R | |
Retrocopy | AACMESVTEQSTELL-EERNLVSIAYKNV-RACSSS*RVVSNT*QKTGGAEKNH*MTQEYREKIETE<AR |
Parental | DICNDVLSLL-EKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEA-FEISKKE |
DIC.D.LSL..E.FL...A...ESK.FYLK.K.D.Y.YLA.V.AGDDKKG.V.QSQQAYQE..FEISKK. | |
Retrocopy | DICSDELSLM<ERFLFLAATEPESKIFYLKIKVDCYCYLAKVTAGDDKKGNVVQSQQAYQET<FEISKKK |
Parental | MQPTHPIR---LGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIM-QLLRDNL |
MQPTHPIR.....L.LNF..FY..ILNSP...CSL.K.A.DEAIAE.D.L.EE.YKD..L...QLL.DNL | |
Retrocopy | MQPTHPIRWSLIHLVLNFFMFYFNILNSPDNSCSLVKSALDEAIAEPDSLNEELYKDRMLRV>QLLGDNL |
Parental | TLWTSDTQGDEAEAGEGGEN |
TLWTS.TQGDEAE.GE.GEN | |
Retrocopy | TLWTSATQGDEAETGERGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 310 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 57 .89 RPM |
SRP017611_liver | 0 .00 RPM | 21 .33 RPM |
SRP040447_lung | 0 .00 RPM | 92 .13 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 17 .82 RPM |