RetrogeneDB ID: | retro_cpor_220 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_10:23738301..23738819(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAZ | ||
Ensembl ID: | ENSCPOG00000020285 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.89 % |
Parental protein coverage: | 72.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNE-ERNLLSVAYKNVVGARRSSWRVVSSIEQKT |
MD.NE.V.KA.LA.QAE.Y...A.CMKS.....AE.SNE..R.LLS.AY.N.VGA.RSSW.V.S..EQK. | |
Retrocopy | MDNNEGVHKASLAVQAE*YNNVATCMKSLS---AE*SNE<KRDLLSIAYQNIVGAGRSSWTVASGVEQKM |
Parental | EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFL-IPNASQAESKVFYLKMKGDYY-RYLAEVAAGDD |
..A.KKQQMA.EYREKIETELR.I.NDVL..L.K.L.IP.ASQAESK.FYLK.K.DYY..YL.EVA.... | |
Retrocopy | GSAGKKQQMAGEYREKIETELRGIYNDVL-FLGKVL>IPSASQAESKFFYLKLKTDYY<CYLTEVAVAET |
Parental | KKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF |
KKGI.DQSQQAYQEAFEI.KK.MQ..HPIRLGLALNF.VF | |
Retrocopy | KKGILDQSQQAYQEAFEIRKKKMQSMHPIRLGLALNFFVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 310 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 57 .89 RPM |
SRP017611_liver | 0 .00 RPM | 21 .33 RPM |
SRP040447_lung | 0 .00 RPM | 92 .13 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 17 .82 RPM |