Parental gene:

VDAC3, ENSECAG00000000438

Aliases:None
Description:voltage-dependent anion channel 3 [Source:HGNC Symbol;Acc:12674]
Organism:Horse (Equus caballus)
Coordinates:27:3070918..3081019(-)


>ENSECAG00000000438
ATGTGTAACACACCGACTTACTGTGACCTAGGAAAGGCTGCTAAGGATGTCTTCAACAAAGGATATGGGTTTGGCATGGT
CAAAATAGATCTGAAAACCAAGTCATGTAGTGGAGTGGAATTTTCTACTTCTGGTCATGCTTACACTGACACAGGGAAAG
CATCAGGCAACCTAGAGACCAAATATAAGATCTGTAACTATGGACTTACCTTCACCCAGAAATGGAACACAGACAATACT
CTTGGAACAGAAATCTCTTGGGAGAATAAGTTGGCTGAAGGGTTGAAACTGACTCTTGATACCATATTTGTACCGAACAC
AGGAAAGAAGAGTGGGAAATTGAAGGCCTCCTATAAACGGGATTGTTTCAGTCTTGGCAGTAATGTTGATATAGATTTTT
CTGGACCAACCATCTATGGCTGGGCTGTGTTAGCCTTTGAAGGTTGGCTTGCTGGCTATCAGATGAGTTTTGACACAGCC
AAATCCAAACTGTCACAGAATAATTTTGCCCTGGGTTACAAGGCTGCAGACTTCCAGCTGCACACTCATGTGAACGATGG
CACTGAATTTGGAGGGTCTATCTACCAGAAGGTTAACGAGAAGATTGAGACGTCAATAAACCTCGCTTGGACGGCTGGCA
GTAACAACACCCGTTTTGGCATTGCTGCTAAATACAAGCTGGATTGCAGAACTTCTCTCTCTGCTAAAGTAAACAATGCC
AGCCTGATTGGACTGGGTTATACTCAGACCCTTCGACCAGGAGTCAAACTGACCCTGTCAGCTTTAATCGATGGAAAGAA
CTTCAATGCAGGAGGTCACAAGGTTGGGTTGGGATTTGAACTAGAAGCTTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 23 .43 RPM
SRP021940_cerebellum 74 .11 RPM
SRP021940_embryo 79 .91 RPM
SRP021940_placental_villous 34 .21 RPM
SRP021940_synovial_membrane 27 .64 RPM
SRP021940_testis 206 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005095 ortholog_one2one 1 retrogene
retro_amel_729,
Bos taurus ENSBTAG00000014068 possible_ortholog 4 retrogenes
retro_btau_1537, retro_btau_1607, retro_btau_365, retro_btau_685,
Canis familiaris ENSCAFG00000005502 ortholog_one2one 5 retrogenes
retro_cfam_1513, retro_cfam_2146, retro_cfam_258, retro_cfam_665, retro_cfam_713,
Choloepus hoffmanni ENSCHOG00000007369 ortholog_one2many 1 retrogene
retro_chof_16,
Dasypus novemcinctus ENSDNOG00000013885 ortholog_one2one 1 retrogene
retro_dnov_1753,
Equus caballus ENSECAG00000012365 within_species_paralog 2 retrogenes
retro_ecab_831, retro_ecab_832,
Felis catus ENSFCAG00000010075 ortholog_one2one 2 retrogenes
retro_fcat_1985, retro_fcat_599,
Homo sapiens ENSG00000078668 ortholog_one2one 1 retrogene
retro_hsap_1375,
Gallus gallus ENSGALG00000003755 ortholog_one2one 1 retrogene
retro_ggal_11,
Gorilla gorilla ENSGGOG00000001932 ortholog_one2one 2 retrogenes
retro_ggor_1071, retro_ggor_3043,
Microcebus murinus ENSMICG00000010235 ortholog_one2one 1 retrogene
retro_mmur_1361,
Monodelphis domestica ENSMODG00000015526 ortholog_one2many 5 retrogenes
retro_mdom_1130, retro_mdom_1331, retro_mdom_1869, retro_mdom_420, retro_mdom_669,
Mus musculus ENSMUSG00000008892 ortholog_one2many 2 retrogenes
retro_mmus_110, retro_mmus_1505,
Nomascus leucogenys ENSNLEG00000012890 ortholog_one2one 1 retrogene
retro_nleu_2593,
Otolemur garnettii ENSOGAG00000016163 ortholog_one2one 4 retrogenes
retro_ogar_2770, retro_ogar_2870, retro_ogar_589, retro_ogar_995,
Pongo abelii ENSPPYG00000018554 ortholog_one2one 8 retrogenes
retro_pabe_1145, retro_pabe_1960, retro_pabe_2304, retro_pabe_3163, retro_pabe_3665, retro_pabe_3791, retro_pabe_819, retro_pabe_971,
Pan troglodytes ENSPTRG00000020205 ortholog_one2one 2 retrogenes
retro_ptro_2548, retro_ptro_945,
Pteropus vampyrus ENSPVAG00000014822 ortholog_one2one 2 retrogenes
retro_pvam_637, retro_pvam_907,
Rattus norvegicus ENSRNOG00000019277 ortholog_one2one 1 retrogene
retro_rnor_1596,
Sarcophilus harrisii ENSSHAG00000017953 ortholog_one2one 1 retrogene
retro_shar_658,
Tupaia belangeri ENSTBEG00000007420 ortholog_one2one 4 retrogenes
retro_tbel_1801, retro_tbel_2150, retro_tbel_2261, retro_tbel_884,
Tarsius syrichta ENSTSYG00000007112 ortholog_one2one 1 retrogene
retro_tsyr_918,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_799 59.20 60.42
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Download FASTA sequences of all ENSECAG00000000438 retrocopies