RetrogeneDB ID: | retro_pabe_1145 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:101488700..101489483(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC1P5 | ||
Ensembl ID: | ENSPPYG00000018554 | ||
Aliases: | VDAC1P5, VDAC3, VDAC5P | ||
Description: | voltage-dependent anion-selective channel protein 3 [Source:RefSeq peptide;Acc:NP_001127515] |
Percent Identity: | 88.17 % |
Parental protein coverage: | 92.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLETKYKVCNYGLT |
MCNTPTYCDLGKAA.DVFNKGYGFGMVKIDLKTKSCS.VEFSTSGHAYTDTGKASGNLE...KVC.YGL. | |
Retrocopy | MCNTPTYCDLGKAAEDVFNKGYGFGMVKIDLKTKSCSAVEFSTSGHAYTDTGKASGNLEPECKVCTYGLP |
Parental | FTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKRDCFSVGSNVDIDFSGPTIYG |
FTQK.NTDNTLGTEIS.E.KLAE.LKL.LDTI.VPNT.K.SG.L.ASYK.DCF.VGSNVDIDFSGPTIYG | |
Retrocopy | FTQKRNTDNTLGTEISLESKLAEELKLSLDTILVPNTEKQSGELEASYKWDCFRVGSNVDIDFSGPTIYG |
Parental | WAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLAW |
W.VL.FEGWL.GYQMSFDTAKSKLSQNNF.LGY.AADFQLHTHVNDGTEFG.SIYQKVNE.IE.SINLAW | |
Retrocopy | WVVLVFEGWLVGYQMSFDTAKSKLSQNNFTLGYEAADFQLHTHVNDGTEFGVSIYQKVNE-IEMSINLAW |
Parental | TAGSNNTRFGIAAKYMLDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTLSAL |
TAGSNNTR.GIAAKY.LDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTL..L | |
Retrocopy | TAGSNNTRSGIAAKYKLDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTLYQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 93 .83 RPM |
SRP007412_cerebellum | 0 .36 RPM | 124 .15 RPM |
SRP007412_heart | 0 .09 RPM | 133 .06 RPM |
SRP007412_kidney | 0 .03 RPM | 35 .57 RPM |
SRP007412_liver | 0 .06 RPM | 38 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1375 |
Pan troglodytes | retro_ptro_945 |
Gorilla gorilla | retro_ggor_1071 |
Macaca mulatta | retro_mmul_2200 |