Parental gene: | VDAC3, ENSCAFG00000005502 |
| Aliases: | None |
| Description: | Canis lupus familiaris voltage-dependent anion channel 3 (VDAC3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001251965] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 16:23276762..23289752(-) |
>ENSCAFG00000005502
GAGTATTCACCAATTTTTGAAGAGATGTGTAACACACCGACTTACTGTGACCTAGGAAAGGCTGCCAAGGATGTCTTCAA
TAAAGGATATGGATTCGGCATGGTCAAAATAGACCTGAGAACCAAGTCTTGTAGTGGAGTGGAATTTTCTACTTCTGGTC
ATGCTTACACTGATACAGGGAAAGCGTCAGGCAACCTAGAGACCAAATATAAGGTCTGTAACTATGGACTTACTTTCACC
CAGAAATGGAACACAGACAATACTCTTGGAACAGAAATCTCTTTGGAGAATAAGTTGGCTGAAGGGTTGAAACTGACTCT
TGATACCATATTTGTACCGAACACAGGAAAGAAGAGTGGAAAATTGAAGGCTTCCTATAAACGAGATTGTTTCAGTGTTG
GCAGTAATGTTGATATAGATTTTTCTGGACCAACCATCTATGGCTGGGCTGTGTTAGCTTTTGAAGGTTGGCTTGCTGGC
TATCAGATGAGTTTTGACACAGCCAAATCCAAACTGTCACAGAATAATTTCGCCCTGGGTTACAAGGCTGCAGACTTCCA
GCTGCACACTCATGTGAATGATGGCACTGAATTTGGAGGGTCTATCTACCAGAAGGTTAATGAGAAGATTGAAACATCAA
TAAACCTTGCTTGGACAGCCGGCAGTAACAATACCCGTTTTGGCATCGCTGCTAAATACAAGCTGGATTGTAGAACTTCC
CTATCTGCTAAAGTAAACAATGCCAGCCTGATTGGACTGGGTTATACTCAGACTCTTCGACCAGGAGTCAAACTGACCCT
ATCAGCTTTAATCGACGGAAAGAACTTCAATGCAGGAGGTCACAAGGTTGGGTTGGGATTTGAACTAGAAGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 70 .43 RPM |
| SRP017611_brain | 47 .32 RPM |
| SRP017611_kidney | 69 .80 RPM |
| SRP017611_liver | 20 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005095 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000014068 | possible_ortholog | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000000985 | within_species_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000015398 | within_species_paralog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000007369 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000013885 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000000438 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000010075 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000078668 | ortholog_one2one | 1 retrogene | |
| Gallus gallus | ENSGALG00000003755 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000001932 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000010235 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000015526 | ortholog_one2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000008892 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012890 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016163 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000018554 | ortholog_one2one | 8 retrogenes | |
| Pan troglodytes | ENSPTRG00000020205 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000014822 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000019277 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000017953 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000007420 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000007112 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_258 | 91.39 | 51.89 | Please wait, loading  |
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| 2. | retro_cfam_665 | 99.30 | 97.59 | Please wait, loading |
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| 3. | retro_cfam_713 | 61.68 | 55.33 | Please wait, loading |
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| 4. | retro_cfam_1513 | 88.40 | 100.00 | Please wait, loading |
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| 5. | retro_cfam_2146 | 85.43 | 68.38 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000005502 retrocopies