Parental gene:

Vdac3, ENSMUSG00000008892

Aliases:None
Description:voltage-dependent anion channel 3 [Source:MGI Symbol;Acc:MGI:106922]
Organism:Mouse (Mus musculus)
Coordinates:8:22577074..22593813(-)


>ENSMUSG00000008892
ATGTGTAACACACCAACTTATTGCGACCTAGGAAAGGCTGCCAAGGATGTCTTTAACAAAGGGTATGGGTTTGGCATGGT
CAAGATAGATCTGAAAACCAAGTCTTGTAGTGGAGTGGAATTTTCTACTTCAGGTCATGCTTATACTGATACAGGGAAAG
CATCAGGCAACCTAGAGACCAAATATAAGGTCTGCAACTATGGGCTCACCTTCACCCAAAAGTGGAATACAGACAATACT
CTTGGGACAGAAATCTCTTGGGAGAATAAGTTGGCTGAAGGGTTGAAACTGACTCTTGATACCATATTTGTACCAAACAC
AGGAAAGAAGAGTGGGAAATTAAAGGCCTCCTATAGACGGGATTGTTTTAGTCTCGGCAGTAATGTTGATATAGATTTTT
CTGGACCGACCATCTATGGCTGGGCTGTGTTGGCCTTTGAAGGTTGGCTTGCTGGCTATCAGATGAGTTTTGACACAGCC
AAATCCAAACTGTCTCAGAATAATTTCGCTCTTGGTTACAAGGCTGCAGACTTCCAGCTGCATACTCACGTGAATGATGG
CACTGAGTTTGGAGGCTCAATCTACCAGAAAGTTAACGAGAGGATTGAAACGTCAATAAACCTGGCATGGACAGCTGGCA
GCAACAACACTCGTTTTGGCATCGCTGCTAAATATAAGCTGGATTGTAGAACTTCTCTATCTGCCAAAGTAAACAATGCC
AGTTTAATTGGACTGGGTTATACGCAGACCCTCCGACCAGGAGTCAAACTGACCCTGTCAGCTTTAATAGATGGAAAGAA
CTTCAATGCAGGAGGCCACAAGGTTGGATTGGGATTTGAACTGGAGGCTTAG

Library Parental gene expression (RPM)
SRP007412_brain 34 .13 RPM
SRP007412_cerebellum 27 .05 RPM
SRP007412_heart 65 .06 RPM
SRP007412_kidney 33 .86 RPM
SRP007412_liver 18 .19 RPM
SRP007412_testis 65 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005095 ortholog_one2many 1 retrogene
retro_amel_729,
Bos taurus ENSBTAG00000014068 possible_ortholog 4 retrogenes
retro_btau_1537, retro_btau_1607, retro_btau_365, retro_btau_685,
Canis familiaris ENSCAFG00000005502 ortholog_one2many 5 retrogenes
retro_cfam_1513, retro_cfam_2146, retro_cfam_258, retro_cfam_665, retro_cfam_713,
Choloepus hoffmanni ENSCHOG00000007369 ortholog_many2many 1 retrogene
retro_chof_16,
Dasypus novemcinctus ENSDNOG00000013885 ortholog_one2many 1 retrogene
retro_dnov_1753,
Equus caballus ENSECAG00000000438 ortholog_one2many 1 retrogene
retro_ecab_799,
Echinops telfairi ENSETEG00000002652 possible_ortholog 2 retrogenes
retro_etel_1456, retro_etel_1487,
Felis catus ENSFCAG00000010075 ortholog_one2many 2 retrogenes
retro_fcat_1985, retro_fcat_599,
Homo sapiens ENSG00000078668 ortholog_one2many 1 retrogene
retro_hsap_1375,
Gallus gallus ENSGALG00000003755 ortholog_one2many 1 retrogene
retro_ggal_11,
Gorilla gorilla ENSGGOG00000001932 ortholog_one2many 2 retrogenes
retro_ggor_1071, retro_ggor_3043,
Microcebus murinus ENSMICG00000010235 ortholog_one2many 1 retrogene
retro_mmur_1361,
Monodelphis domestica ENSMODG00000015526 ortholog_many2many 5 retrogenes
retro_mdom_1130, retro_mdom_1331, retro_mdom_1869, retro_mdom_420, retro_mdom_669,
Mus musculus ENSMUSG00000020402 within_species_paralog 3 retrogenes
retro_mmus_2013, retro_mmus_3079, retro_mmus_3124,
Mus musculus ENSMUSG00000021771 within_species_paralog 1 retrogene
retro_mmus_2667,
Nomascus leucogenys ENSNLEG00000012890 ortholog_one2many 1 retrogene
retro_nleu_2593,
Otolemur garnettii ENSOGAG00000016163 ortholog_one2many 4 retrogenes
retro_ogar_2770, retro_ogar_2870, retro_ogar_589, retro_ogar_995,
Pongo abelii ENSPPYG00000018554 ortholog_one2many 8 retrogenes
retro_pabe_1145, retro_pabe_1960, retro_pabe_2304, retro_pabe_3163, retro_pabe_3665, retro_pabe_3791, retro_pabe_819, retro_pabe_971,
Pan troglodytes ENSPTRG00000020205 ortholog_one2many 2 retrogenes
retro_ptro_2548, retro_ptro_945,
Pteropus vampyrus ENSPVAG00000014822 ortholog_one2many 2 retrogenes
retro_pvam_637, retro_pvam_907,
Rattus norvegicus ENSRNOG00000019277 ortholog_one2many 1 retrogene
retro_rnor_1596,
Sarcophilus harrisii ENSSHAG00000017953 ortholog_one2many 1 retrogene
retro_shar_658,
Tupaia belangeri ENSTBEG00000007420 ortholog_one2many 4 retrogenes
retro_tbel_1801, retro_tbel_2150, retro_tbel_2261, retro_tbel_884,
Tarsius syrichta ENSTSYG00000007112 ortholog_one2many 1 retrogene
retro_tsyr_918,
Tursiops truncatus ENSTTRG00000009681 possible_ortholog 3 retrogenes
retro_ttru_1201, retro_ttru_1254, retro_ttru_634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_110 99.29 100.00
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2. retro_mmus_1505 83.33 50.88
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Download FASTA sequences of all ENSMUSG00000008892 retrocopies