Parental gene:

VDAC3, ENSPTRG00000020205

Aliases:VDAC3, VDAC1P5, VDAC5P
Description:Voltage-dependent anion channel 3 [Source:UniProtKB/TrEMBL;Acc:K7CAB0]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:8:38872993..38887045(+)


>ENSPTRG00000020205
ATGTGTAACACACCAACATACTGTGACCTAGGAAAGGCTGCTAAGGATGTCTTCAACAAAGGATATGGCTTTGGCATGGT
CAAGATAGACCTGAAAACCAAGTCTTGTAGTGGAGTGCAGGAATTTTCTACTTCTGGTCATGCTTACACTGATACAGGGA
AAGCATCAGGCAACCTAGAAACCAAATATAAGGTCTGTAACTATGGACTTACCTTCACCCAGAAATGGAACACAGACAAT
ACTCTAGGGACAGAAATCTCTTGGGAGAATAAGTTGGCTGAAGGGTTGAAACTGACTCTTGATACCATATTTGTACCGAA
CACAGGAAAGAAGAGTGGGAAATTGAAGGCCTCCTATAAACGAGATTGTTTTAGTGTTGGCAGTAATGTTGATATAGATT
TTTCTGGACCAACCATCTATGGCTGGGCTGTGTTGGCCTTCGAAGGGTGGCTTGCTGGCTATCAGATGAGTTTTGACACA
GCCAAATCCAAACTGTCACAGAATAATTTCGCCCTGGGTTACAAGGCTGCGGACTTCCAGCTGCACACACATGTGAACGA
TGGCACTGAATTTGGAGGTTCTATCTACCAGAAGGTGAATGAGAAGATTGAAACATCCATAAACCTTGCTTGGACAGCTG
GGAGTAACAACACCCGTTTTGGCATTGCTGCTAAGTACATGCTGGATTGTAGAACTTCTCTCTCTGCTAAAGTAAATAAT
GCCAGCCTGATTGGACTGGGTTATACTCAGACCCTTCGACCAGGAGTCAAATTGACTTTATCAGCTTTAATCGATGGGAA
GAACTTCAGTGCAGGAGGTCACAAGGTTGGCTTGGGATTTGAACTGGAAGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 101 .85 RPM
SRP007412_cerebellum 75 .17 RPM
SRP007412_heart 132 .59 RPM
SRP007412_kidney 62 .22 RPM
SRP007412_liver 40 .85 RPM
SRP007412_testis 159 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005095 ortholog_one2one 1 retrogene
retro_amel_729,
Bos taurus ENSBTAG00000014068 possible_ortholog 4 retrogenes
retro_btau_1537, retro_btau_1607, retro_btau_365, retro_btau_685,
Canis familiaris ENSCAFG00000005502 ortholog_one2one 5 retrogenes
retro_cfam_1513, retro_cfam_2146, retro_cfam_258, retro_cfam_665, retro_cfam_713,
Choloepus hoffmanni ENSCHOG00000007369 ortholog_one2many 1 retrogene
retro_chof_16,
Dasypus novemcinctus ENSDNOG00000013885 ortholog_one2one 1 retrogene
retro_dnov_1753,
Equus caballus ENSECAG00000000438 ortholog_one2one 1 retrogene
retro_ecab_799,
Felis catus ENSFCAG00000010075 ortholog_one2one 2 retrogenes
retro_fcat_1985, retro_fcat_599,
Homo sapiens ENSG00000078668 ortholog_one2one 1 retrogene
retro_hsap_1375,
Gallus gallus ENSGALG00000003755 ortholog_one2one 1 retrogene
retro_ggal_11,
Gorilla gorilla ENSGGOG00000001932 ortholog_one2one 2 retrogenes
retro_ggor_1071, retro_ggor_3043,
Microcebus murinus ENSMICG00000010235 ortholog_one2one 1 retrogene
retro_mmur_1361,
Monodelphis domestica ENSMODG00000015526 ortholog_one2many 5 retrogenes
retro_mdom_1130, retro_mdom_1331, retro_mdom_1869, retro_mdom_420, retro_mdom_669,
Mus musculus ENSMUSG00000008892 ortholog_one2many 2 retrogenes
retro_mmus_110, retro_mmus_1505,
Nomascus leucogenys ENSNLEG00000012890 ortholog_one2one 1 retrogene
retro_nleu_2593,
Otolemur garnettii ENSOGAG00000016163 ortholog_one2one 4 retrogenes
retro_ogar_2770, retro_ogar_2870, retro_ogar_589, retro_ogar_995,
Pongo abelii ENSPPYG00000018554 ortholog_one2one 8 retrogenes
retro_pabe_1145, retro_pabe_1960, retro_pabe_2304, retro_pabe_3163, retro_pabe_3665, retro_pabe_3791, retro_pabe_819, retro_pabe_971,
Pan troglodytes ENSPTRG00000017235 within_species_paralog 12 retrogenes
retro_ptro_1593, retro_ptro_1900, retro_ptro_249, retro_ptro_2905, retro_ptro_3138, retro_ptro_3215, retro_ptro_3246, retro_ptro_345, retro_ptro_588, retro_ptro_682, retro_ptro_84, retro_ptro_861,
Pteropus vampyrus ENSPVAG00000014822 ortholog_one2one 2 retrogenes
retro_pvam_637, retro_pvam_907,
Rattus norvegicus ENSRNOG00000019277 ortholog_one2one 1 retrogene
retro_rnor_1596,
Sarcophilus harrisii ENSSHAG00000017953 ortholog_one2one 1 retrogene
retro_shar_658,
Tupaia belangeri ENSTBEG00000007420 ortholog_one2one 4 retrogenes
retro_tbel_1801, retro_tbel_2150, retro_tbel_2261, retro_tbel_884,
Tarsius syrichta ENSTSYG00000007112 ortholog_one2one 1 retrogene
retro_tsyr_918,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_945 89.77 92.61
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2. retro_ptro_2548 58.62 61.27
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Download FASTA sequences of all ENSPTRG00000020205 retrocopies