Parental gene:

RPS7, ENSECAG00000020253

Aliases:None
Description:ribosomal protein S7 [Source:HGNC Symbol;Acc:10440]
Organism:Horse (Equus caballus)
Coordinates:15:88602733..88608419(-)


>ENSECAG00000020253
CAGGCGCTCCTGGAGCTGGAGATGAACTCGGACCTCAAGGCCCAGCTGCGGGAGCTGAACATCACGGCAGCCAAGGAAAT
TGAAGTTGGCGGTGGTCGGAAAGCTATCATCATCTTTGTTCCTGTTCCTCAACTGAAGTCTTTCCAGAAAATCCAAGTCC
GGCTAGTACGTGAATTGGAGAAAAAGTTCAGTGGGAAGCACGTTGTGTTTATTGCTCAGAGGAGAATTCTGCCTAAGCCA
ACTCGAAAAAGCCGTACAAAAAATAAGCAAAAGCGTCCCAGGAGCCGTACTCTCACAGCTGTGCATGATGCGATCCTGGA
GGACTTGGTTTTCCCAAGTGAAATTGTGGGCAAGAGGATCCGCGTGAAACTGGATGGCAGCCGGCTCATAAAGGTCCACC
TGGATAAAGCACAGCAGAACAATGTGGAACACAAGGTTGAAACTTTTTCTGGTGTTTATAAGAAGCTCACGGGCAAGGAT
GTTAATTTTGAATTCCCAGAGTTTCAATTGTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 322 .45 RPM
SRP021940_embryo 569 .40 RPM
SRP021940_cerebellum 234 .58 RPM
SRP021940_testis 211 .59 RPM
SRP021940_placental_villous 243 .92 RPM
SRP021940_articular_cartilage 527 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016462 possible_ortholog 2 retrogenes
retro_cjac_16, retro_cjac_2287,
Dasypus novemcinctus ENSDNOG00000013285 ortholog_one2one 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Felis catus ENSFCAG00000023243 possible_ortholog 2 retrogenes
retro_fcat_1534, retro_fcat_41,
Gorilla gorilla ENSGGOG00000023095 possible_ortholog 13 retrogenes
retro_ggor_2028, retro_ggor_2090, retro_ggor_2161, retro_ggor_218, retro_ggor_2452, retro_ggor_2927, retro_ggor_294, retro_ggor_2965, retro_ggor_3047, retro_ggor_346, retro_ggor_400, retro_ggor_484, retro_ggor_597,
Loxodonta africana ENSLAFG00000015087 possible_ortholog 11 retrogenes
retro_lafr_1223, retro_lafr_160, retro_lafr_217, retro_lafr_318, retro_lafr_319, retro_lafr_413, retro_lafr_514, retro_lafr_720, retro_lafr_786, retro_lafr_964, retro_lafr_970,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Macaca mulatta ENSMMUG00000011870 possible_ortholog 7 retrogenes
retro_mmul_1831, retro_mmul_1846, retro_mmul_1929, retro_mmul_23, retro_mmul_2403, retro_mmul_2540, retro_mmul_357,
Mus musculus ENSMUSG00000061477 possible_ortholog 2 retrogenes
retro_mmus_271, retro_mmus_53,
Nomascus leucogenys ENSNLEG00000015407 ortholog_one2one 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Oryctolagus cuniculus ENSOCUG00000008507 possible_ortholog 2 retrogenes
retro_ocun_203, retro_ocun_230,
Otolemur garnettii ENSOGAG00000028165 possible_ortholog 1 retrogene
retro_ogar_133,
Pongo abelii ENSPPYG00000025872 possible_ortholog 12 retrogenes
retro_pabe_1033, retro_pabe_1555, retro_pabe_2506, retro_pabe_2982, retro_pabe_2983, retro_pabe_31, retro_pabe_313, retro_pabe_360, retro_pabe_3659, retro_pabe_3803, retro_pabe_499, retro_pabe_524,
Pan troglodytes ENSPTRG00000011615 possible_ortholog 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Pteropus vampyrus ENSPVAG00000002071 possible_ortholog 7 retrogenes
retro_pvam_1051, retro_pvam_1183, retro_pvam_1330, retro_pvam_1437, retro_pvam_207, retro_pvam_543, retro_pvam_887,
Rattus norvegicus ENSRNOG00000008551 possible_ortholog 2 retrogenes
retro_rnor_39, retro_rnor_391,
Sus scrofa ENSSSCG00000027353 possible_ortholog 5 retrogenes
retro_sscr_136, retro_sscr_137, retro_sscr_240, retro_sscr_364, retro_sscr_956,
Ictidomys tridecemlineatus ENSSTOG00000024830 ortholog_one2one 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 ortholog_one2one 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_276 66.02 58.24
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2. retro_ecab_396 81.90 68.24
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Download FASTA sequences of all ENSECAG00000020253 retrocopies