Parental gene:

RPS7, ENSMMUG00000011870

Aliases:None
Description:40S ribosomal protein S7 [Source:RefSeq peptide;Acc:NP_001253725]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:13:3081724..3087511(+)


>ENSMMUG00000011870
ATGTTCAGTTCGAGCGCCAAGATCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCCGGCATCTCCCAGGCTCT
TCTGGAGCTGGAGATGAACTCGGACCTCAAGGCTCAGCTCAGGGAGCTGAATATTACGGCAGCCAAGGAAATTGAAGTTG
GTGGTGGTCGGAAAGCTATCATAATCTTTGTTCCTGTTCCTCAACTGAAATCTTTCCAGAAAATCCAAGTCCGGCTAGTA
CGCGAGTTGGAGAAAAAGTTCAGTGGGAAGCATGTTGTCTTTATCGCTCAGAGGAGAATTCTGCCTAAGCCAACTCGAAA
AAGCCGTACAAAAAATAAACAGAAGCGTCCCAGGAGCCGTACTCTGACAGCTGTGCATGATGCCATCCTTGAGGACTTGG
TCTTCCCAAGCGAAATTGTGGGCAAGAGAATCCGCGTGAAACTAGATGGCAGCCGGCTCATAAAGGTTCATTTGGACAAA
GCACAGCAGAACAATGTGGAACACAAGGTTGAAACTTTTTCTGGTGTCTATAAGAAGCTCACAGGCAAGGATGTTAATTT
TGAATTCCCAGAGTTTCAATTGTAA

Library Parental gene expression (RPM)
SRP007412_brain 129 .19 RPM
SRP007412_brain_prefrontal_cortex 100 .51 RPM
SRP007412_cerebellum 117 .59 RPM
SRP007412_heart 165 .12 RPM
SRP007412_kidney 162 .44 RPM
SRP007412_liver 98 .56 RPM
SRP007412_testis 191 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018435 ortholog_one2one 2 retrogenes
retro_amel_391, retro_amel_914,
Callithrix jacchus ENSCJAG00000016462 possible_ortholog 2 retrogenes
retro_cjac_16, retro_cjac_2287,
Dasypus novemcinctus ENSDNOG00000013285 possible_ortholog 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Equus caballus ENSECAG00000020253 possible_ortholog 2 retrogenes
retro_ecab_276, retro_ecab_396,
Felis catus ENSFCAG00000023243 possible_ortholog 2 retrogenes
retro_fcat_1534, retro_fcat_41,
Homo sapiens ENSG00000171863 possible_ortholog 14 retrogenes
retro_hsap_111, retro_hsap_112, retro_hsap_1242, retro_hsap_1737, retro_hsap_1837, retro_hsap_2907, retro_hsap_2925, retro_hsap_329, retro_hsap_3635, retro_hsap_404, retro_hsap_4711, retro_hsap_4760, retro_hsap_528, retro_hsap_703,
Gorilla gorilla ENSGGOG00000023095 possible_ortholog 13 retrogenes
retro_ggor_2028, retro_ggor_2090, retro_ggor_2161, retro_ggor_218, retro_ggor_2452, retro_ggor_2927, retro_ggor_294, retro_ggor_2965, retro_ggor_3047, retro_ggor_346, retro_ggor_400, retro_ggor_484, retro_ggor_597,
Loxodonta africana ENSLAFG00000015087 possible_ortholog 11 retrogenes
retro_lafr_1223, retro_lafr_160, retro_lafr_217, retro_lafr_318, retro_lafr_319, retro_lafr_413, retro_lafr_514, retro_lafr_720, retro_lafr_786, retro_lafr_964, retro_lafr_970,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Monodelphis domestica ENSMODG00000014495 possible_ortholog 2 retrogenes
retro_mdom_662, retro_mdom_810,
Nomascus leucogenys ENSNLEG00000015407 possible_ortholog 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Otolemur garnettii ENSOGAG00000028165 possible_ortholog 1 retrogene
retro_ogar_133,
Ochotona princeps ENSOPRG00000005085 possible_ortholog 3 retrogenes
retro_opri_1036, retro_opri_415, retro_opri_500,
Pan troglodytes ENSPTRG00000011615 possible_ortholog 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Pteropus vampyrus ENSPVAG00000002071 possible_ortholog 7 retrogenes
retro_pvam_1051, retro_pvam_1183, retro_pvam_1330, retro_pvam_1437, retro_pvam_207, retro_pvam_543, retro_pvam_887,
Sus scrofa ENSSSCG00000027353 ortholog_one2one 5 retrogenes
retro_sscr_136, retro_sscr_137, retro_sscr_240, retro_sscr_364, retro_sscr_956,
Ictidomys tridecemlineatus ENSSTOG00000024830 possible_ortholog 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 possible_ortholog 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_23 89.18 100.00
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2. retro_mmul_357 62.50 56.70
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3. retro_mmul_1831 92.82 100.00
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4. retro_mmul_1846 84.43 85.05
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5. retro_mmul_1929 87.57 90.21
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6. retro_mmul_2403 78.70 54.12
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7. retro_mmul_2540 76.92 100.00
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Download FASTA sequences of all ENSMMUG00000011870 retrocopies