RetrogeneDB ID: | retro_sscr_364 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:20010669..20011047(-) | ||
Located in intron of: | ENSSSCG00000011230 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSSSCG00000027353 | ||
Aliases: | None | ||
Description: | ribosomal protein S7 [Source:HGNC Symbol;Acc:10440] |
Percent Identity: | 76.98 % |
Parental protein coverage: | 64.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | VPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDL |
VPVPQLKSF.KIQV.LV.ELEK.F.GKHVVFI.Q.RILPKPT.KS.TKNKQK.PRS.T.TA...A.LEDL | |
Retrocopy | VPVPQLKSFWKIQV*LVQELEKLFRGKHVVFITQGRILPKPT*KSSTKNKQKHPRSCTPTAMPSAVLEDL |
Parental | VFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEF |
.F...IVGKRI.V.L..S.LIKVHLDKAQ.NNVEHKVETFSGV.KK..GKDVNFEF | |
Retrocopy | IFLRGIVGKRICVRLGSSCLIKVHLDKAQHNNVEHKVETFSGV*KKFMGKDVNFEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 595 .70 RPM |
SRP014902_testis | 0 .00 RPM | 1672 .18 RPM |
SRP018288_heart | 0 .00 RPM | 389 .26 RPM |
SRP018288_kidney | 0 .00 RPM | 502 .67 RPM |
SRP018288_liver | 0 .00 RPM | 405 .85 RPM |
SRP018288_lung | 0 .00 RPM | 760 .34 RPM |
SRP018856_adipose | 0 .15 RPM | 801 .54 RPM |
SRP035408_brain | 0 .00 RPM | 613 .80 RPM |
SRP035408_liver | 0 .00 RPM | 805 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018435 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000016462 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013285 | 14 retrocopies | |
Equus caballus | ENSECAG00000020253 | 2 retrocopies | |
Felis catus | ENSFCAG00000023243 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023095 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015087 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000006121 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011870 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015407 | 10 retrocopies | |
Otolemur garnettii | ENSOGAG00000028165 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011615 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002071 | 7 retrocopies | |
Sus scrofa | ENSSSCG00000027353 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024830 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001616 | 6 retrocopies |