Parental gene:

RPL23A, ENSOPRG00000012620

Aliases:None
Description:ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_39:247521..249337(+)


>ENSOPRG00000012620
CCCGCCCCTCCCAAAGCCGAAGCCAAAGCCAAGGCCCTGAAGGCCAAGAAGGCGGTGCTGAAAGGTGTCCACAGCCACAA
GAAGAAGAAGATCCGCACATCTCCCACTTTCCGGAGGCCCAAGACGCAGCGCCTGCGCCGGCAGCCCAAATACCCCCGGA
AGAGCGCGCCCAGGAGGAATAAGCTTGACCACTACGCCATCATCAAGTTCCCCCTGACCACAGAGTCTGCTATGAAGAAG
ATAGAAGACAACAACACACTGGTGTTCATTGTGGATGTCAAGGCCAACAAGCACCAGATCAAACAAGCCGTGAAGAAGCT
CTATGACATTGATGTGGCCAAAGTCAATACCCTGATCAGGCCCGATGGAGAAAAGAAGGCGTACGTGCGGTTGGCTCCTG
ATTATGATGCTCTGGATGTTGCCAACAAAATTGGGATCATCTAA

Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000000974 ortholog_one2one 10 retrogenes
retro_dord_102, retro_dord_310, retro_dord_316, retro_dord_36, retro_dord_427, retro_dord_469, retro_dord_567, retro_dord_622, retro_dord_628, retro_dord_735,
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
retro_ggor_1027, retro_ggor_1028, retro_ggor_1123, retro_ggor_120, retro_ggor_123, retro_ggor_1284, retro_ggor_140, retro_ggor_1431, retro_ggor_158, retro_ggor_1650, retro_ggor_1743, retro_ggor_1789, retro_ggor_1911, retro_ggor_1948, retro_ggor_2164, retro_ggor_2239, retro_ggor_2285, retro_ggor_229, retro_ggor_2409, retro_ggor_2475, retro_ggor_2568, retro_ggor_2764, retro_ggor_2773, retro_ggor_580, retro_ggor_611, retro_ggor_642,
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
retro_lafr_1176, retro_lafr_153, retro_lafr_237, retro_lafr_33, retro_lafr_335, retro_lafr_442, retro_lafr_510, retro_lafr_525, retro_lafr_551, retro_lafr_557, retro_lafr_643, retro_lafr_78, retro_lafr_891, retro_lafr_908, retro_lafr_957, retro_lafr_96,
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
retro_mdom_120, retro_mdom_870, retro_mdom_912,
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
retro_shar_188, retro_shar_373, retro_shar_407, retro_shar_448, retro_shar_498, retro_shar_564, retro_shar_624, retro_shar_630, retro_shar_685, retro_shar_698, retro_shar_824, retro_shar_829, retro_shar_835,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_44 73.68 64.63
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2. retro_opri_54 52.52 93.88
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3. retro_opri_68 87.16 100.00
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4. retro_opri_87 56.44 68.03
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5. retro_opri_102 94.56 100.00
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6. retro_opri_119 66.22 97.96
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7. retro_opri_129 61.22 98.64
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8. retro_opri_150 90.54 100.00
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9. retro_opri_156 66.99 67.35
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10. retro_opri_163 66.89 99.32
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11. retro_opri_172 82.01 93.20
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12. retro_opri_182 56.06 87.76
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13. retro_opri_195 55.56 97.28
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14. retro_opri_225 75.33 100.00
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15. retro_opri_226 66.44 100.00
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16. retro_opri_253 73.47 97.96
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17. retro_opri_272 55.91 85.03
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18. retro_opri_323 55.14 72.11
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19. retro_opri_332 60.87 92.52
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20. retro_opri_452 87.16 100.00
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21. retro_opri_485 56.06 87.76
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22. retro_opri_504 79.73 100.00
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23. retro_opri_507 63.11 81.63
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24. retro_opri_548 55.56 97.28
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25. retro_opri_555 75.33 100.00
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26. retro_opri_617 66.89 99.32
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27. retro_opri_620 55.91 85.03
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28. retro_opri_621 55.14 72.11
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29. retro_opri_708 90.54 100.00
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30. retro_opri_715 52.52 93.88
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31. retro_opri_754 66.00 100.00
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32. retro_opri_767 61.22 98.64
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33. retro_opri_813 66.99 67.35
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34. retro_opri_817 94.56 100.00
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35. retro_opri_859 73.47 97.96
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36. retro_opri_869 77.55 98.64
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37. retro_opri_899 67.88 91.84
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38. retro_opri_923 66.44 100.00
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39. retro_opri_932 53.33 80.95
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40. retro_opri_981 60.87 92.52
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41. retro_opri_982 97.30 100.00
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42. retro_opri_998 73.68 64.63
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43. retro_opri_1021 66.44 100.00
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44. retro_opri_1027 56.44 68.03
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45. retro_opri_1058 66.22 97.96
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46. retro_opri_1153 82.01 93.20
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47. retro_opri_1157 53.21 73.47
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48. retro_opri_1163 71.90 82.31
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49. retro_opri_1181 84.51 95.92
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Download FASTA sequences of all ENSOPRG00000012620 retrocopies