RetrogeneDB ID: | retro_opri_932 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_46830:3483..3833(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSOPRG00000012620 | ||
Aliases: | None | ||
Description: | ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] |
Percent Identity: | 53.33 % |
Parental protein coverage: | 80.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KKIRTSPTFRRPKTQRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKH |
K.I.T.PTF...KT..L..QP.YP.KS.PRRN.LD...I.KFP..T.SAMKKIE..N.LVF..DVKANKH | |
Retrocopy | KEILTRPTF**HKTLGL*WQPRYPWKSTPRRNELDYSVILKFPRSTKSAMKKIE-VNALVFLMDVKANKH |
Parental | QIKQAVKKLYDI-DVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII |
..K............AK.N.LI..DG.KK....L.PDYD.L.V.NK.G.. | |
Retrocopy | RAKKLCRDSMSM<EMAKGNLLIILDG-KKVHRSLVPDYDGLNVINKLGVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |