RetrogeneDB ID: | retro_opri_767 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_296:208896..209311(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSOPRG00000012620 | ||
Aliases: | None | ||
Description: | ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] |
Percent Identity: | 61.22 % |
Parental protein coverage: | 98.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | APPKAEAKA-KALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTQRLRRQPKYPRKSAPRRNKLDHYAIIK- |
.P...EAKA...L.A.K...KG......KKI.TSPTF...KT..LR.Q.KYP.K...R.NKLD..AI.K. | |
Retrocopy | SPCPSEAKANESLEAEKVMMKGI----QKKIHTSPTFQQLKTLCLRQQCKYPQK---RKNKLDQCAITK> |
Parental | FPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALD |
FP...ESA.KK.EDN.TLVFIV.VKANKHQ..QA.KKL.D.DVAKV.TLIRP..EKK.Y..LAPDYDALD | |
Retrocopy | FP*P-ESALKKTEDNSTLVFIVNVKANKHQVIQALKKLCDTDVAKVDTLIRPVEEKKVYIWLAPDYDALD |
Parental | VANKIGI |
..N..GI | |
Retrocopy | DINRMGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |