RetrogeneDB ID: | retro_opri_452 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_124:571588..572019(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSOPRG00000012620 | ||
Aliases: | None | ||
Description: | ribosomal protein L23a [Source:HGNC Symbol;Acc:10317] |
Percent Identity: | 87.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTQRLRRQP-KYPRKSAPRRNKLDHYAIIK |
PA.PKAEAKAKALK.KKAVLKGVHSHKK..I.TSPTF..PKTQRL.RQP.KYP.KSA.RRNKLDHYAIIK | |
Retrocopy | PAYPKAEAKAKALKPKKAVLKGVHSHKK--ICTSPTFWKPKTQRLHRQP<KYPWKSALRRNKLDHYAIIK |
Parental | FPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALD |
F.LTTES.MKKIEDN.TLVF.VDVKANKHQIKQAVKKLYDIDVAKVNTLIR..GEKKA.V.LAPDYDALD | |
Retrocopy | FLLTTESTMKKIEDN-TLVFTVDVKANKHQIKQAVKKLYDIDVAKVNTLIRLNGEKKAHVQLAPDYDALD |
Parental | VANKIGII |
VANKIGII | |
Retrocopy | VANKIGII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |