Parental gene:

CDV3, ENSPPYG00000025898

Aliases:None
Description:CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928]
Organism:Orangutan (Pongo abelii)
Coordinates:3:135973436..135987648(+)


>ENSPPYG00000025898
AGCAGTGGAGCCGCGGGTGCGGCGGGCGGCGGGGCGGGCGCGGGGACCCGGCCGGGCGACGGCGGGACCGCCAGCGCGGG
GGCTGCGGGCCCAGGGGCCGCCACCAAGGCTGTGACGAAGCACGAAGATGAATGGAAAGAAATTAAGCAAAAAGAGGTTG
ATTACAGCGGCCTCAGGGTTCAGGCAATGCAAATAAGCAGTGAAAAGGAAGAAGACGATAATGAAAAGAGACAAGATCCA
GGTGATAACTGGGAAGAAGGTGGAGGTGGTGGTGGAGGTATGGAAAAATCTTCAGGTCCCTGGAATAAAACAGCTCCAGT
ACAAGCACCTCCCTGCTCCATATTAGTTACAGAAACCCCAGAACCGGCGATGACTAGTGGTGTGTATAGGCCTCCTGGGG
CCAGGTTAACCACAACAAGGAAAACACCACAAGGACCACCAGAAATCTACAGTGATACACAGTTCCCATCCCTGCAGTCA
ACTGCCATACATGTAGAAAGCCGGAAGGATAAAGAAATGGAGAAGAGCTTTGAAGTAGTAAGACACAAAAATAGAGGTAG
GGATGAGGTTTCAAAAAACCAGGCCCTTAAACTTCAGCTAGACAACCAATATGCTGTGCTTGAAAATCAGAAAAGCAGCC
ACTCACAATACAAT

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .39 RPM
SRP007412_cerebellum 6 .81 RPM
SRP007412_heart 16 .05 RPM
SRP007412_kidney 14 .58 RPM
SRP007412_liver 13 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000035556 ortholog_one2many 1 retrogene
retro_btau_253,
Choloepus hoffmanni ENSCHOG00000008963 ortholog_one2one 5 retrogenes
retro_chof_1355, retro_chof_1701, retro_chof_1763, retro_chof_2308, retro_chof_818,
Callithrix jacchus ENSCJAG00000002998 ortholog_one2one 1 retrogene
retro_cjac_2928,
Dasypus novemcinctus ENSDNOG00000010208 ortholog_one2one 5 retrogenes
retro_dnov_2359, retro_dnov_2616, retro_dnov_460, retro_dnov_496, retro_dnov_656,
Equus caballus ENSECAG00000015689 ortholog_one2one 2 retrogenes
retro_ecab_444, retro_ecab_636,
Homo sapiens ENSG00000091527 ortholog_one2one 1 retrogene
retro_hsap_2678,
Gorilla gorilla ENSGGOG00000027821 ortholog_one2one 1 retrogene
retro_ggor_1869,
Myotis lucifugus ENSMLUG00000009864 ortholog_one2one 1 retrogene
retro_mluc_1296,
Mus musculus ENSMUSG00000032803 ortholog_one2one 10 retrogenes
retro_mmus_1266, retro_mmus_2405, retro_mmus_2408, retro_mmus_2411, retro_mmus_2412, retro_mmus_2416, retro_mmus_2418, retro_mmus_2422, retro_mmus_2423, retro_mmus_2534,
Ochotona princeps ENSOPRG00000003600 ortholog_one2one 3 retrogenes
retro_opri_1017, retro_opri_739, retro_opri_740,
Pan troglodytes ENSPTRG00000015409 ortholog_one2one 1 retrogene
retro_ptro_1805,
Sus scrofa ENSSSCG00000011637 ortholog_one2many 1 retrogene
retro_sscr_701,
Tupaia belangeri ENSTBEG00000014910 possible_ortholog 5 retrogenes
retro_tbel_2284, retro_tbel_2443, retro_tbel_4022, retro_tbel_4157, retro_tbel_4378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2301 57.85 55.05
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Download FASTA sequences of all ENSPPYG00000025898 retrocopies