Parental gene:

ENSSSCG00000011637

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:13:82170559..82183239(+)


>ENSSSCG00000011637
AGCAAACCACACGAGGTCGCCAGCAGGAACAGCGGCGCAGCGAGAGCCGCCAGCGGGAGCAGCGGAGCCGCGAGCGCGGC
GGGCGGAGGGGCAGGCGCGGGGGCCCGGCCGGGCGACGGCGGGACCACCGCGGCCGCGGGCCCCGGGCCCGCAACCAAGG
CTTTGACAAAGGAGGAAGATGAGTGGAAAGATTTTGAGCAAAAAGAGGTTGATTACAGTGGCCTAAGAGTTCAAGCAATG
CAAATAAGTGAAAAGGAAGAAGATGAAAATGAAAAGAGAGAAGATCCAGGTGATAACTGGGAAGAAGGTGGAGGTGGTGG
TGGTGGTGTAGGTGTAGAAAAATCTTCGGGTCCCTGGAATAAAACAGCTCCAGTACAAGCACCTCCTGCTCCAGTAGTTG
TTTCAGAAACCCCAGAACCCACAATGACTAGTGGCGTGTATAGGCCTCCTGGGGCCAGGTTGACCACAACAAGGAAAATA
CCACAAGGACCACCAGAAATCTACAGTGATACACAGTTCCCATCCCTGCAGTCCACTGCCAAGCATGTAGAAAGCCGGAA
CAGGTACTTAAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 1 .86 RPM
SRP014902_testis 4 .10 RPM
SRP018288_heart 5 .19 RPM
SRP018288_kidney 10 .84 RPM
SRP018288_liver 8 .00 RPM
SRP018288_lung 1 .53 RPM
SRP018856_adipose 20 .58 RPM
SRP035408_brain 19 .56 RPM
SRP035408_liver 9 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000035556 ortholog_one2many 1 retrogene
retro_btau_253,
Choloepus hoffmanni ENSCHOG00000008963 ortholog_one2many 5 retrogenes
retro_chof_1355, retro_chof_1701, retro_chof_1763, retro_chof_2308, retro_chof_818,
Callithrix jacchus ENSCJAG00000002998 ortholog_one2many 1 retrogene
retro_cjac_2928,
Dasypus novemcinctus ENSDNOG00000010208 ortholog_one2many 5 retrogenes
retro_dnov_2359, retro_dnov_2616, retro_dnov_460, retro_dnov_496, retro_dnov_656,
Equus caballus ENSECAG00000015689 ortholog_one2one 2 retrogenes
retro_ecab_444, retro_ecab_636,
Homo sapiens ENSG00000091527 ortholog_one2many 1 retrogene
retro_hsap_2678,
Gorilla gorilla ENSGGOG00000027821 ortholog_one2many 1 retrogene
retro_ggor_1869,
Myotis lucifugus ENSMLUG00000009864 possible_ortholog 1 retrogene
retro_mluc_1296,
Mus musculus ENSMUSG00000032803 ortholog_one2many 10 retrogenes
retro_mmus_1266, retro_mmus_2405, retro_mmus_2408, retro_mmus_2411, retro_mmus_2412, retro_mmus_2416, retro_mmus_2418, retro_mmus_2422, retro_mmus_2423, retro_mmus_2534,
Nomascus leucogenys ENSNLEG00000003470 ortholog_one2many 1 retrogene
retro_nleu_1181,
Oryctolagus cuniculus ENSOCUG00000012748 ortholog_one2many 1 retrogene
retro_ocun_1106,
Ochotona princeps ENSOPRG00000003600 ortholog_one2many 3 retrogenes
retro_opri_1017, retro_opri_739, retro_opri_740,
Pongo abelii ENSPPYG00000025898 ortholog_one2many 1 retrogene
retro_pabe_2301,
Pan troglodytes ENSPTRG00000015409 ortholog_one2many 1 retrogene
retro_ptro_1805,
Tupaia belangeri ENSTBEG00000014910 possible_ortholog 5 retrogenes
retro_tbel_2284, retro_tbel_2443, retro_tbel_4022, retro_tbel_4157, retro_tbel_4378,
Tarsius syrichta ENSTSYG00000011401 possible_ortholog 2 retrogenes
retro_tsyr_1381, retro_tsyr_1759,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_701 66.00 76.44
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Download FASTA sequences of all ENSSSCG00000011637 retrocopies