RetrogeneDB ID: | retro_btau_253 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:41647960..41648566(+) | ||
Located in intron of: | ENSBTAG00000010091 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.56566 | ||
Ensembl ID: | ENSBTAG00000035556 | ||
Aliases: | None | ||
Description: | protein CDV3 homolog [Source:RefSeq peptide;Acc:NP_001178969] |
Percent Identity: | 89.05 % |
Parental protein coverage: | 81.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAETEERSLDNFFAKRDKKKKKERSNRAASAASAAGGAGGSSGATGAAGGGAGARTRPGDSGTAGVGATG |
.AETEERSLDNFF.KRDKKKK.ERSN....AASAAGGAGGSSGAT..AGGGAG..TRPGDSGTAG.GATG | |
Retrocopy | VAETEERSLDNFFTKRDKKKK-ERSNQ---AASAAGGAGGSSGATDSAGGGAGVGTRPGDSGTAGLGATG |
Parental | PGAATKVVTKEEDEWKEFEQKEVDYSGLRVQAMQISSEKEEDEVEKREDPSDNWEEGGGGGG-GVEKSSG |
PGAATKVVTKEEDE.KEFEQKEVDYSGLRVQAMQIS.EKEED..EKREDPSDNWEEGGGGGG.GVEKSSG | |
Retrocopy | PGAATKVVTKEEDE*KEFEQKEVDYSGLRVQAMQIS-EKEED--EKREDPSDNWEEGGGGGGDGVEKSSG |
Parental | PWNKTAPVQAPPAPVVVTETPEPTMTSGVYRPPGARLTTTRKAPQGPPEIYSDTQFPSLQSTAKHVESRK |
PWNKTA.VQ.PPAPVVVTETPEPTMTSGVYRPPGARLTTTRKAPQGPPEIYSDT..PSLQST.KHVES.K | |
Retrocopy | PWNKTALVQVPPAPVVVTETPEPTMTSGVYRPPGARLTTTRKAPQGPPEIYSDTH-PSLQSTTKHVESWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 133 .88 RPM |
ERP005899_muscle | 0 .21 RPM | 87 .74 RPM |
SRP017611_brain | 0 .46 RPM | 81 .17 RPM |
SRP017611_kidney | 0 .95 RPM | 170 .29 RPM |
SRP017611_liver | 0 .68 RPM | 104 .20 RPM |
SRP030211_testis | 0 .28 RPM | 218 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000035556 | 1 retrocopy |
retro_btau_253 ,
|
Choloepus hoffmanni | ENSCHOG00000008963 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000002998 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010208 | 5 retrocopies | |
Equus caballus | ENSECAG00000015689 | 2 retrocopies | |
Homo sapiens | ENSG00000091527 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027821 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009864 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032803 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003470 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012748 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003600 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025898 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015409 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011637 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014910 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000011401 | 2 retrocopies |