Parental gene:

RPL34, ENSPTRG00000016353

Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:111231413..111241263(+)


>ENSPTRG00000016353
ATGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAATACAGCCTCTAACAAAACTAGGCTGTCCCGAACCCCTGG
TAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGCAGACTTC
GAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGT
TCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTT
GAAGGCACAAGCACAGAGTCAGAAAGCTAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 97 .95 RPM
SRP007412_cerebellum 85 .36 RPM
SRP007412_heart 66 .98 RPM
SRP007412_kidney 223 .00 RPM
SRP007412_liver 113 .88 RPM
SRP007412_testis 50 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Microcebus murinus ENSMICG00000002180 ortholog_one2one 32 retrogenes
retro_mmur_1029, retro_mmur_1274, retro_mmur_1302, retro_mmur_1328, retro_mmur_134, retro_mmur_1366, retro_mmur_1412, retro_mmur_1424, retro_mmur_147, retro_mmur_1495, retro_mmur_1541, retro_mmur_187, retro_mmur_221, retro_mmur_286, retro_mmur_309, retro_mmur_336, retro_mmur_417, retro_mmur_494, retro_mmur_57, retro_mmur_643, retro_mmur_67, retro_mmur_677, retro_mmur_686, retro_mmur_737, retro_mmur_745, retro_mmur_76, retro_mmur_763, retro_mmur_789, retro_mmur_823, retro_mmur_864, retro_mmur_879, retro_mmur_980,
Macaca mulatta ENSMMUG00000011901 possible_ortholog 1 retrogene
retro_mmul_162,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Mustela putorius furo ENSMPUG00000008873 possible_ortholog 17 retrogenes
retro_mputfur_1028, retro_mputfur_1095, retro_mputfur_1130, retro_mputfur_1170, retro_mputfur_12, retro_mputfur_1242, retro_mputfur_1305, retro_mputfur_1480, retro_mputfur_1501, retro_mputfur_360, retro_mputfur_378, retro_mputfur_475, retro_mputfur_517, retro_mputfur_557, retro_mputfur_562, retro_mputfur_852, retro_mputfur_923,
Otolemur garnettii ENSOGAG00000006774 ortholog_one2one 1 retrogene
retro_ogar_44,
Pongo abelii ENSPPYG00000014988 possible_ortholog 18 retrogenes
retro_pabe_1171, retro_pabe_1351, retro_pabe_1609, retro_pabe_1630, retro_pabe_1859, retro_pabe_2338, retro_pabe_2560, retro_pabe_2784, retro_pabe_2931, retro_pabe_3330, retro_pabe_3352, retro_pabe_3375, retro_pabe_3788, retro_pabe_385, retro_pabe_420, retro_pabe_566, retro_pabe_77, retro_pabe_827,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Ictidomys tridecemlineatus ENSSTOG00000025964 ortholog_one2one 14 retrogenes
retro_itri_1144, retro_itri_1207, retro_itri_1234, retro_itri_1249, retro_itri_1406, retro_itri_1508, retro_itri_1521, retro_itri_1542, retro_itri_209, retro_itri_267, retro_itri_344, retro_itri_766, retro_itri_898, retro_itri_967,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_133 78.81 100.00
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2. retro_ptro_201 84.29 59.83
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3. retro_ptro_218 87.18 100.00
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4. retro_ptro_237 88.60 97.44
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5. retro_ptro_388 73.03 74.36
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6. retro_ptro_468 61.64 60.68
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7. retro_ptro_513 66.27 70.09
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8. retro_ptro_538 79.41 58.12
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9. retro_ptro_580 74.36 97.44
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10. retro_ptro_592 87.00 84.62
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11. retro_ptro_643 68.06 61.54
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12. retro_ptro_651 55.00 66.67
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13. retro_ptro_674 77.19 97.44
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14. retro_ptro_856 85.47 100.00
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15. retro_ptro_865 83.33 97.44
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16. retro_ptro_1105 56.60 89.74
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17. retro_ptro_1210 75.23 91.45
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18. retro_ptro_1224 89.13 78.63
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19. retro_ptro_1285 69.75 100.00
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20. retro_ptro_1358 89.74 100.00
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21. retro_ptro_1500 68.63 87.18
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22. retro_ptro_1570 65.42 90.60
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23. retro_ptro_1819 63.48 98.29
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24. retro_ptro_2087 68.49 62.39
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25. retro_ptro_2302 71.15 88.03
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26. retro_ptro_2347 84.55 94.02
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27. retro_ptro_2502 83.18 88.89
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28. retro_ptro_2748 65.55 100.00
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29. retro_ptro_2775 90.60 100.00
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30. retro_ptro_2922 69.86 60.68
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31. retro_ptro_3244 64.38 61.54
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Download FASTA sequences of all ENSPTRG00000016353 retrocopies