RetrogeneDB ID: | retro_itri_967 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393352.1:3836138..3836466(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSSTOG00000025964 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 66.96 % |
Parental protein coverage: | 94.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT-KKHVSR |
R.R.SY.TAS..T.LS.TPG.RI.Y.YTKK.GK.P.SAC...PGRL.GVRAVRP.VLMRLSKT..K.VSR | |
Retrocopy | RQRFSYSTASKDTQLSQTPGSRIIYIYTKKAGKVPRSACCAHPGRLQGVRAVRPEVLMRLSKT<LKPVSR |
Parental | AYGGSMCAKCVRDRIKRAFLIEEQKIVVKV-LKAQAQSQKAK |
A..GS....CV.DR.K...LIEEQK..VKV.LKA..QSQKAK | |
Retrocopy | A*DGSTGPQCVCDRTKYTLLIEEQKTIVKV<LKAEVQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |