Parental gene:

Eif4a1, ENSRNOG00000030628

Aliases:None
Description:eukaryotic initiation factor 4A-I [Source:RefSeq peptide;Acc:NP_955404]
Organism:Rat (Rattus norvegicus)
Coordinates:10:56016894..56022402(-)


>ENSRNOG00000030628
ATGTCTGCGAGTCAGGATTCTCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCGGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTGGATAGCTTCGATGACATGAATCTCTCAGAATCCCTCCTCCGTGGTATTTATGCCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCTATTCTTCCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAGTCTGGGACT
GGGAAAACAGCTACATTTGCCATATCCATTCTGCAGCAGATTGAATTAGATCTAAAGGCCACTCAGGCTTTGGTTCTGGC
ACCCACTCGTGAATTGGCTCAGCAGATTCAAAAGGTGGTTATGGCACTGGGAGACTACATGGGTGCCTCTTGTCATGCCT
GTATTGGGGGCACCAACGTGCGTGCTGAGGTGCAGAAGCTGCAAATGGAAGCTCCCCATATCATCGTGGGCACCCCTGGC
CGGGTGTTCGATATGCTTAACCGGAGATACCTGTCACCCAAATACATCAAGATGTTCGTCCTGGATGAAGCAGATGAAAT
GCTAAGCCGTGGGTTCAAGGATCAGATCTATGATATATTCCAAAAGCTCAACAGCAACACACAGGTAGTTTTGCTGTCTG
CCACAATGCCTTCTGATGTCCTTGAGGTGACTAAGAAGTTCATGAGAGACCCTATTCGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCCGCCAATTCTACATCAATGTGGAACGAGAGGAGTGGAAGCTCGACACATTGTGTGACTTGTA
TGAAACACTGACCATCACCCAGGCAGTAATCTTTATTAATACCAGAAGGAAGGTGGACTGGCTCACTGAGAAGATGCATG
CCCGGGATTTCACAGTTTCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGACGTGATCATGAGGGAGTTCCGGTCT
GGCTCTAGCAGAGTATTAATTACCACTGACCTGTTGGCCAGAGGCATTGATGTGCAGCAGGTCTCCCTAGTCATCAATTA
TGACCTTCCCACCAACAGGGAAAACTACATCCACAGAATTGGTCGAGGTGGTCGGTTTGGCCGGAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACTTTCTACAACACCTCCATTGAAGAGATGCCCCTC
AACGTTGCTGACCTCATTTGA

Library Parental gene expression (RPM)
SRP017611_brain 162 .34 RPM
SRP017611_kidney 168 .73 RPM
SRP017611_liver 132 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000004900 ortholog_one2one 1 retrogene
retro_cpor_1088,
Erinaceus europaeus ENSEEUG00000003581 ortholog_one2one 1 retrogene
retro_eeur_610,
Felis catus ENSFCAG00000024897 ortholog_one2one 1 retrogene
retro_fcat_370,
Homo sapiens ENSG00000161960 ortholog_one2one 10 retrogenes
retro_hsap_1004, retro_hsap_1182, retro_hsap_1252, retro_hsap_1270, retro_hsap_1796, retro_hsap_2520, retro_hsap_4836, retro_hsap_4873, retro_hsap_4931, retro_hsap_610,
Gorilla gorilla ENSGGOG00000024702 ortholog_one2one 8 retrogenes
retro_ggor_1321, retro_ggor_1572, retro_ggor_3015, retro_ggor_537, retro_ggor_798, retro_ggor_920, retro_ggor_983, retro_ggor_998,
Macropus eugenii ENSMEUG00000010780 ortholog_one2one 2 retrogenes
retro_meug_158, retro_meug_179,
Myotis lucifugus ENSMLUG00000003415 ortholog_one2one 3 retrogenes
retro_mluc_1047, retro_mluc_1229, retro_mluc_1805,
Macaca mulatta ENSMMUG00000013499 ortholog_one2one 1 retrogene
retro_mmul_1280,
Monodelphis domestica ENSMODG00000007090 ortholog_one2one 3 retrogenes
retro_mdom_1282, retro_mdom_326, retro_mdom_711,
Mus musculus ENSMUSG00000059796 ortholog_one2one 7 retrogenes
retro_mmus_1810, retro_mmus_1853, retro_mmus_2320, retro_mmus_2473, retro_mmus_3122, retro_mmus_325, retro_mmus_527,
Nomascus leucogenys ENSNLEG00000009547 ortholog_one2one 7 retrogenes
retro_nleu_2109, retro_nleu_2117, retro_nleu_230, retro_nleu_2470, retro_nleu_2769, retro_nleu_440, retro_nleu_701,
Pan troglodytes ENSPTRG00000008694 ortholog_one2one 10 retrogenes
retro_ptro_1201, retro_ptro_1465, retro_ptro_2954, retro_ptro_3112, retro_ptro_3247, retro_ptro_450, retro_ptro_750, retro_ptro_810, retro_ptro_862, retro_ptro_870,
Rattus norvegicus ENSRNOG00000001815 within_species_paralog 2 retrogenes
retro_rnor_1163, retro_rnor_2340,
Sorex araneus ENSSARG00000006017 ortholog_one2one 7 retrogenes
retro_sara_224, retro_sara_383, retro_sara_461, retro_sara_567, retro_sara_6, retro_sara_605, retro_sara_89,
Ictidomys tridecemlineatus ENSSTOG00000024814 ortholog_one2one 1 retrogene
retro_itri_610,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1059 87.80 62.07
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2. retro_rnor_2213 89.73 80.79
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3. retro_rnor_2306 95.82 100.00
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Download FASTA sequences of all ENSRNOG00000030628 retrocopies