RetrogeneDB ID: | retro_mmus_2320 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:10813542..10814479(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083997 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4a1 | ||
Ensembl ID: | ENSMUSG00000059796 | ||
Aliases: | Eif4a1, BM-010, Ddx2a, Eif4 | ||
Description: | eukaryotic translation initiation factor 4A1 [Source:MGI Symbol;Acc:MGI:95303] |
Percent Identity: | 80.32 % |
Parental protein coverage: | 77.09 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLR-GIYAYGFEKPSAIQQRAILPCIKG |
MSA..DS.SRDNGP...EPEG.I.SN.NE.V.SF.DMNLSESLLR.GIY.Y.FEKPSAIQQR.ILPCIK. | |
Retrocopy | MSARKDSLSRDNGPIRTEPEGII*SNGNETVISFNDMNLSESLLR<GIYVYSFEKPSAIQQRDILPCIKS |
Parental | YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN |
YDVI..AQSGTGKTATFAISILQQIELD.KATQALVLA.T..LA.QIQKVV.AL.DY.GASCHA.IGGTN | |
Retrocopy | YDVIP*AQSGTGKTATFAISILQQIELDIKATQALVLASTHDLAEQIQKVVKALRDYIGASCHAYIGGTN |
Parental | -VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ |
...A.VQKLQ.EAPHIIVGTPG.VF.MLN.RYLS.KYI.MFVLDEA.EMLS..FKDQ.YDIFQ.LNSNTQ | |
Retrocopy | <LCAGVQKLQIEAPHIIVGTPGWVFGMLNQRYLSSKYINMFVLDEANEMLSHEFKDQMYDIFQMLNSNTQ |
Parental | VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF |
VVLLSAT.PSDVL.VT.KFMRDPI.I.VKK.ELTLEGI..FYINVE.EEWK.DTLCDLYE.L.ITQA.IF | |
Retrocopy | VVLLSATVPSDVLQVTRKFMRDPIWIFVKKKELTLEGIWPFYINVELEEWKFDTLCDLYEALPITQAIIF |
Parental | INTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDV |
INTRRKVDW.TEKM.A.DFTVSAMHGDMDQK..D. | |
Retrocopy | INTRRKVDWCTEKMSAQDFTVSAMHGDMDQKK*DM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 110 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 70 .39 RPM |
SRP007412_heart | 0 .00 RPM | 78 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 113 .32 RPM |
SRP007412_liver | 0 .00 RPM | 151 .78 RPM |
SRP007412_testis | 0 .00 RPM | 65 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000004900 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003581 | 1 retrocopy | |
Felis catus | ENSFCAG00000024897 | 1 retrocopy | |
Homo sapiens | ENSG00000161960 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000024702 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000010780 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003415 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000013499 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007090 | 3 retrocopies | |
Mus musculus | ENSMUSG00000025580 | 2 retrocopies | |
Mus musculus | ENSMUSG00000059796 | 7 retrocopies |
retro_mmus_1810, retro_mmus_1853, retro_mmus_2320 , retro_mmus_2473, retro_mmus_3122, retro_mmus_325, retro_mmus_527,
|
Nomascus leucogenys | ENSNLEG00000009547 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000008694 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000030628 | 3 retrocopies | |
Sorex araneus | ENSSARG00000006017 | 7 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024814 | 1 retrocopy |