RetrogeneDB ID: | retro_meug_158 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_4665:2506..3088(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSMEUG00000010780 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282] |
Percent Identity: | 86.08 % |
Parental protein coverage: | 54.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASC |
AI.PCIKGYDVIAQAQSGTGKTATFAISILQQIEL..KA.QALVL.P.RELAQQIQKVVMALGDY...SC | |
Retrocopy | AIIPCIKGYDVIAQAQSGTGKTATFAISILQQIELGSKAIQALVLTPPRELAQQIQKVVMALGDYISVSC |
Parental | HACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ |
HACIGGTNVRAEVQKLQMEAP..IVGTPG.VFDMLNR..LSPKYIKMFVLDEADEMLSR.FKDQIYDIFQ | |
Retrocopy | HACIGGTNVRAEVQKLQMEAPYLIVGTPGHVFDMLNRQ*LSPKYIKMFVLDEADEMLSRRFKDQIYDIFQ |
Parental | KLSGNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER |
K..GNTQV.LLS...PSDVLEVTKKFMR.PIRILVKKEE.TLE.I..FYINVE. | |
Retrocopy | KFGGNTQVILLSTSKPSDVLEVTKKFMRNPIRILVKKEEKTLEEIH*FYINVEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |