Parental gene:

EIF4A1, ENSMODG00000007090

Aliases:None
Description:eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282]
Organism:Opossum (Monodelphis domestica)
Coordinates:2:255039674..255044464(-)


>ENSMODG00000007090
GCCTATAATTCTTCCATCTCCAGATCCAGAGACAATGGCCCTGATGGAATGGACCCTGATGGAGTCATCGAGAGTAACTG
GAATGAGATTGTGGATAGCTTTGATGATATGAACCTCTCAGAATCTCTTCTTCGTGGTATATATGCCTATGGTTTTGAGA
AGCCATCTGCTATTCAGCAACGTGCAATTCTTCCTTGTATCAAGGGTTATGATGTTATTGCTCAAGCCCAGTCTGGGACC
GGGAAGACTGCTACCTTTGCCATTTCCATTTTGCAACAGATTGAACTGGACTTAAAGGCTACACAGGCCTTGGTTTTGGC
ACCTACTAGAGAGCTTGCTCAGCAGATTCAGAAGGTAGTTATGGCATTGGGAGACTACATGGGTGCCTCATGCCATGCCT
GTATTGGAGGCACAAACGTTCGGGCTGAAGTTCAGAAATTGCAGATGGAGGCTCCCCACATCATTGTGGGCACCCCAGGC
CGAGTCTTTGACATGCTTAATCGGAGATACCTATCTCCTAAATACATCAAGATGTTTGTTCTGGATGAAGCAGATGAAAT
GTTGAGTCGTGGTTTTAAGGACCAGATCTATGACATATTCCAGAAACTCAGTGGCAATACTCAGGTGGTACTCCTGTCAG
CCACCATGCCTTCAGATGTGTTGGAAGTGACCAAGAAGTTTATGAGGGATCCTATCAGGATTCTAGTCAAGAAGGAGGAA
TTGACATTGGAAGGCATTCGTCAGTTTTACATTAATGTGGAACGAGAGGAGTGGAAGCTAGATACCTTGTGTGATCTGTA
TGAAACGCTGACTATTACCCAAGCTGTTATCTTCATCAATACCCGCCGAAAGGTGGATTGGCTCACTGAGAAAATGCATG
CCCGTGATTTTACTGTCTCTGCAATGCATGGAGACATGGACCAAAAAGAACGTGATGTTATCATGAGGGAATTTCGCTCA
GGCTCCAGTCGGGTGCTTATTACCACTGACCTATTGGCTAGAGGCATTGATGTTCAACAAGTATCTTTGGTTATTAATTA
TGACCTTCCCACCAACCGGGAGAATTACATTCATAGAATTGGCCGTGGAGGGCGATTTGGTCGTAAAGGTGTGGCCATCA
ACATGGTGACAGAGGAAGACAAGAGGATCCTTCGAGACATTGAGACCTTCTACAACACCTCCATTGAGGAGATGCCTCTC
AATGTGGCTGACCTCATCTGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016753 ortholog_one2one 1 retrogene
retro_amel_1300,
Bos taurus ENSBTAG00000000132 ortholog_one2one 1 retrogene
retro_btau_1207,
Callithrix jacchus ENSCJAG00000015114 ortholog_one2many 8 retrogenes
retro_cjac_1876, retro_cjac_2046, retro_cjac_2521, retro_cjac_2679, retro_cjac_3086, retro_cjac_3203, retro_cjac_395, retro_cjac_727,
Cavia porcellus ENSCPOG00000004900 ortholog_one2one 1 retrogene
retro_cpor_1088,
Dipodomys ordii ENSDORG00000014225 ortholog_one2one 1 retrogene
retro_dord_732,
Erinaceus europaeus ENSEEUG00000003581 ortholog_one2one 1 retrogene
retro_eeur_610,
Felis catus ENSFCAG00000024897 ortholog_one2many 1 retrogene
retro_fcat_370,
Homo sapiens ENSG00000161960 ortholog_one2one 10 retrogenes
retro_hsap_1004, retro_hsap_1182, retro_hsap_1252, retro_hsap_1270, retro_hsap_1796, retro_hsap_2520, retro_hsap_4836, retro_hsap_4873, retro_hsap_4931, retro_hsap_610,
Gorilla gorilla ENSGGOG00000024702 ortholog_one2many 8 retrogenes
retro_ggor_1321, retro_ggor_1572, retro_ggor_3015, retro_ggor_537, retro_ggor_798, retro_ggor_920, retro_ggor_983, retro_ggor_998,
Loxodonta africana ENSLAFG00000001107 ortholog_one2many 1 retrogene
retro_lafr_1210,
Macropus eugenii ENSMEUG00000010780 ortholog_one2one 2 retrogenes
retro_meug_158, retro_meug_179,
Microcebus murinus ENSMICG00000014759 ortholog_one2one 2 retrogenes
retro_mmur_1164, retro_mmur_1477,
Myotis lucifugus ENSMLUG00000003415 ortholog_one2many 3 retrogenes
retro_mluc_1047, retro_mluc_1229, retro_mluc_1805,
Macaca mulatta ENSMMUG00000013499 ortholog_one2many 1 retrogene
retro_mmul_1280,
Monodelphis domestica ENSMODG00000002190 within_species_paralog 1 retrogene
retro_mdom_202,
Mus musculus ENSMUSG00000059796 ortholog_one2one 7 retrogenes
retro_mmus_1810, retro_mmus_1853, retro_mmus_2320, retro_mmus_2473, retro_mmus_3122, retro_mmus_325, retro_mmus_527,
Nomascus leucogenys ENSNLEG00000009547 ortholog_one2many 7 retrogenes
retro_nleu_2109, retro_nleu_2117, retro_nleu_230, retro_nleu_2470, retro_nleu_2769, retro_nleu_440, retro_nleu_701,
Oryctolagus cuniculus ENSOCUG00000010375 ortholog_one2many 5 retrogenes
retro_ocun_1020, retro_ocun_1326, retro_ocun_1375, retro_ocun_475, retro_ocun_934,
Otolemur garnettii ENSOGAG00000008132 ortholog_one2one 2 retrogenes
retro_ogar_1375, retro_ogar_1862,
Ochotona princeps ENSOPRG00000008591 ortholog_one2one 2 retrogenes
retro_opri_155, retro_opri_985,
Pongo abelii ENSPPYG00000007926 ortholog_one2one 7 retrogenes
retro_pabe_1090, retro_pabe_1474, retro_pabe_3759, retro_pabe_3792, retro_pabe_548, retro_pabe_846, retro_pabe_987,
Pan troglodytes ENSPTRG00000008694 ortholog_one2one 10 retrogenes
retro_ptro_1201, retro_ptro_1465, retro_ptro_2954, retro_ptro_3112, retro_ptro_3247, retro_ptro_450, retro_ptro_750, retro_ptro_810, retro_ptro_862, retro_ptro_870,
Rattus norvegicus ENSRNOG00000030628 ortholog_one2one 3 retrogenes
retro_rnor_1059, retro_rnor_2213, retro_rnor_2306,
Sorex araneus ENSSARG00000006017 ortholog_one2many 7 retrogenes
retro_sara_224, retro_sara_383, retro_sara_461, retro_sara_567, retro_sara_6, retro_sara_605, retro_sara_89,
Ictidomys tridecemlineatus ENSSTOG00000024814 ortholog_one2one 1 retrogene
retro_itri_610,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_326 84.68 84.98
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2. retro_mdom_711 80.79 55.67
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3. retro_mdom_1282 92.21 56.90
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Download FASTA sequences of all ENSMODG00000007090 retrocopies