RetrogeneDB ID: | retro_sara_383 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_188824:1041..1817(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSSARG00000006017 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282] |
Percent Identity: | 93.08 % |
Parental protein coverage: | 63.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY |
MSASQDS.S.DNGPDGME.EGVIE.NWNEIVDSFDDMNLSESLL.GIYAYGFEKPSAIQQ.AILPCIKGY | |
Retrocopy | MSASQDSQSKDNGPDGMESEGVIERNWNEIVDSFDDMNLSESLLHGIYAYGFEKPSAIQQQAILPCIKGY |
Parental | DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV |
DVIAQAQSGTGK.ATF.ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV | |
Retrocopy | DVIAQAQSGTGKMATFVISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV |
Parental | RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV |
.AEVQKLQMEAPHIIVGTPG...DMLNRRYLSPKYIKMF.LDEADEMLSRGFKDQIY.IFQKLNSNTQV. | |
Retrocopy | CAEVQKLQMEAPHIIVGTPGGALDMLNRRYLSPKYIKMFMLDEADEMLSRGFKDQIYGIFQKLNSNTQVF |
Parental | LLSATMP-SDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK |
LLSATMP.SDVLEVTKKFM.DPIRILVKKEELTLEGIRQFYINVEREE.K | |
Retrocopy | LLSATMP<SDVLEVTKKFMKDPIRILVKKEELTLEGIRQFYINVEREE*K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |