RetrogeneDB ID: | retro_ptro_1201 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 17:2537092..2537708(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSPTRG00000008694 | ||
Aliases: | None | ||
Description: | Pan troglodytes eukaryotic translation initiation factor 4A, isoform 1 (EIF4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098575] |
Percent Identity: | 86.06 % |
Parental protein coverage: | 50.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPS-AIQQRAILPCIKG |
MSASQDSRSRDNGP.GMEP..V.ESNWNEIVDSFDDMNL.ESLLRGIYAYGFEKP..A.QQRAILPCIKG | |
Retrocopy | MSASQDSRSRDNGPNGMEPGDVRESNWNEIVDSFDDMNLLESLLRGIYAYGFEKPL<AVQQRAILPCIKG |
Parental | YDVIAQAQSGTGK-TATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGT |
YDVI.QAQSGTGK.TATFA.SILQQIELDLKATQAL.LAPTRELAQQI.KV.MALGD.MGAS.HAC.GGT | |
Retrocopy | YDVITQAQSGTGK<TATFATSILQQIELDLKATQALILAPTRELAQQI*KVGMALGDCMGASYHACRGGT |
Parental | NVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN |
.V.AEVQKLQMEAPHII.GTPG.V.DMLN.RY.SPKYIK.FVLD.ADEMLS.GF.DQIYDIFQKLN.N | |
Retrocopy | HVCAEVQKLQMEAPHIIGGTPGHVCDMLNCRYVSPKYIKIFVLDKADEMLSCGFRDQIYDIFQKLNNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 108 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 114 .43 RPM |
SRP007412_heart | 0 .00 RPM | 90 .88 RPM |
SRP007412_kidney | 0 .00 RPM | 190 .54 RPM |
SRP007412_liver | 0 .00 RPM | 366 .10 RPM |
SRP007412_testis | 0 .00 RPM | 114 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1796 |
Gorilla gorilla | retro_ggor_1321 |
Pongo abelii | retro_pabe_1474 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000004900 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003581 | 1 retrocopy | |
Felis catus | ENSFCAG00000024897 | 1 retrocopy | |
Homo sapiens | ENSG00000161960 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000024702 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000010780 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003415 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000013499 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007090 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059796 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009547 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000008694 | 10 retrocopies |
retro_ptro_1201 , retro_ptro_1465, retro_ptro_2954, retro_ptro_3112, retro_ptro_3247, retro_ptro_450, retro_ptro_750, retro_ptro_810, retro_ptro_862, retro_ptro_870,
|
Pan troglodytes | ENSPTRG00000015718 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000030628 | 3 retrocopies | |
Sorex araneus | ENSSARG00000006017 | 7 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024814 | 1 retrocopy |