Parental gene:

UBA52, ENSSSCG00000013907

Aliases:UBA52, UBCEP2
Description:Sus scrofa ubiquitin A-52 residue ribosomal protein fusion product 1 (UBA52), mRNA. [Source:RefSeq mRNA;Acc:NM_214211]
Organism:Pig (Sus scrofa)
Coordinates:2:59061511..59064004(+)


>ENSSSCG00000013907
ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGATACCATTGAGAATGTCAA
AGCTAAAATCCAGGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCTGGCAAACAGCTGGAGGATGGCC
GCACTCTCTCAGACTACAATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGGCATCATCGAGCCC
TCCCTCCGCCAGCTCGCTCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCTGCATCCCCGCGC
GGTGAACTGCCGCAAGAAGAAGTGTGGCCACACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 930 .18 RPM
SRP014902_testis 633 .68 RPM
SRP018288_heart 281 .06 RPM
SRP018288_kidney 338 .07 RPM
SRP018288_liver 281 .76 RPM
SRP018288_lung 463 .82 RPM
SRP018856_adipose 1056 .76 RPM
SRP035408_brain 282 .03 RPM
SRP035408_liver 174 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014723 ortholog_one2one 8 retrogenes
retro_cfam_1671, retro_cfam_1725, retro_cfam_1879, retro_cfam_1933, retro_cfam_2205, retro_cfam_600, retro_cfam_654, retro_cfam_873,
Latimeria chalumnae ENSLACG00000008132 ortholog_one2many 1 retrogene
retro_lcha_11,
Microcebus murinus ENSMICG00000017583 ortholog_one2one 5 retrogenes
retro_mmur_143, retro_mmur_1486, retro_mmur_150, retro_mmur_633, retro_mmur_708,
Myotis lucifugus ENSMLUG00000029594 possible_ortholog 5 retrogenes
retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta ENSMMUG00000016085 possible_ortholog 7 retrogenes
retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Monodelphis domestica ENSMODG00000003499 ortholog_one2one 1 retrogene
retro_mdom_867,
Mustela putorius furo ENSMPUG00000015527 ortholog_one2one 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 possible_ortholog 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Otolemur garnettii ENSOGAG00000028000 ortholog_one2one 10 retrogenes
retro_ogar_1345, retro_ogar_1419, retro_ogar_1583, retro_ogar_1604, retro_ogar_1792, retro_ogar_2026, retro_ogar_2370, retro_ogar_2485, retro_ogar_2544, retro_ogar_3337,
Pongo abelii ENSPPYG00000009746 possible_ortholog 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Ictidomys tridecemlineatus ENSSTOG00000004678 ortholog_one2one 1 retrogene
retro_itri_49,
Tursiops truncatus ENSTTRG00000021461 ortholog_one2one 1 retrogene
retro_ttru_1582,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2one 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_988 69.23 100.00
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Download FASTA sequences of all ENSSSCG00000013907 retrocopies