RetrogeneDB ID: | retro_mmul_1184 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:55025275..55025647(-) | ||
Located in intron of: | ENSMMUG00000001137 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.17989 | ||
Ensembl ID: | ENSMMUG00000016085 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001182685] |
Percent Identity: | 80.8 % |
Parental protein coverage: | 97.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQ.FV.TLTGKTI.LEVEPS.T.EN.KAKIQDKEGIPPDQQ.LIFAGKQLEDG.TLSDYNIQK.ST.HLV | |
Retrocopy | MQLFVETLTGKTIILEVEPSYTTENFKAKIQDKEGIPPDQQCLIFAGKQLEDGCTLSDYNIQKQSTMHLV |
Parental | LRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKK |
L.L.GGI.E.SL.QL..KY.C.KMIC.KCYARLHP.AVNCR.KKCGHTN.L.PKK | |
Retrocopy | LHLQGGITESSLCQLT*KYSCNKMICHKCYARLHPCAVNCR-KKCGHTNSLCPKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .23 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 96 .70 RPM |
SRP007412_cerebellum | 0 .00 RPM | 45 .07 RPM |
SRP007412_heart | 0 .00 RPM | 105 .46 RPM |
SRP007412_kidney | 0 .00 RPM | 99 .65 RPM |
SRP007412_liver | 0 .00 RPM | 248 .19 RPM |
SRP007412_testis | 0 .00 RPM | 230 .80 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2815 |
Gorilla gorilla | retro_ggor_2782 |