RetrogeneDB ID: | retro_cfam_1037 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:34043741..34044470(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000007678 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS2 | ||
Ensembl ID: | ENSCAFG00000011662 | ||
Aliases: | None | ||
Description: | phosphoribosyl pyrophosphate synthetase 2 [Source:HGNC Symbol;Acc:9465] |
Percent Identity: | 94.65 % |
Parental protein coverage: | 76.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNIVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMEL |
MPN.VLFSGSSHQDLSQ.VAD.LGLELGKVVTKKFSNQETSVEI.ESVRGEDVYIIQSGCGEINDNLMEL | |
Retrocopy | MPNVVLFSGSSHQDLSQCVADQLGLELGKVVTKKFSNQETSVEISESVRGEDVYIIQSGCGEINDNLMEL |
Parental | LIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
L.MINACKIASSSRVTA.I.CFPYARQDKKDKSRAPISAKLVANML.VAGADHIITMDLHASQIQGFFD. | |
Retrocopy | LVMINACKIASSSRVTAIILCFPYARQDKKDKSRAPISAKLVANMLWVAGADHIITMDLHASQIQGFFDT |
Parental | PVDNLYAEPAVLQWIRENIAEWRNCIIVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVDRMVLVGD |
PV.NLYAEPAVLQWIREN.AEWRNCIIVSPDAGGAKRVTSIADRL.VEFALIHKER.KANEVDRMVLVGD | |
Retrocopy | PVENLYAEPAVLQWIRENVAEWRNCIIVSPDAGGAKRVTSIADRLDVEFALIHKEREKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAGATK |
VKDRVAILVDDMADTCGTICHAADKLLSAGATK | |
Retrocopy | VKDRVAILVDDMADTCGTICHAADKLLSAGATK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .34 RPM | 6 .34 RPM |
SRP017611_brain | 0 .08 RPM | 3 .18 RPM |
SRP017611_kidney | 0 .13 RPM | 21 .20 RPM |
SRP017611_liver | 0 .07 RPM | 6 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011662 | 2 retrocopies |
retro_cfam_1037 , retro_cfam_1433,
|
Canis familiaris | ENSCAFG00000017976 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003885 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005166 | 2 retrocopies | |
Felis catus | ENSFCAG00000026323 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017334 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016087 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001197 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020125 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009452 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007710 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006056 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009917 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003226 | 1 retrocopy |