RetrogeneDB ID: | retro_cpor_692 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_24:934942..935404(+) | ||
Located in intron of: | ENSCPOG00000012778 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2L3 | ||
Ensembl ID: | ENSCPOG00000006044 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
M.AS.RLMKELEEI.KCGMKNF.NIQVDEANLLTWQGL.VPDNPPYDKGAFRIEINFPAEYPFKP.KITF | |
Retrocopy | MVASGRLMKELEEICKCGMKNFCNIQVDEANLLTWQGLTVPDNPPYDKGAFRIEINFPAEYPFKPLKITF |
Parental | KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA |
KTK.YHPNI.EKGQVCLPVISAENWKPATKTDQVIQS.IALVND.QPEH.LRADLAEEYSKD.KKFCKNA | |
Retrocopy | KTKTYHPNIAEKGQVCLPVISAENWKPATKTDQVIQSFIALVNDLQPEHLLRADLAEEYSKDCKKFCKNA |
Parental | EEFTKKYGEKRPVD |
EEFTKKY.EKRPVD | |
Retrocopy | EEFTKKYREKRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 25 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 40 .72 RPM |
SRP017611_liver | 0 .00 RPM | 29 .95 RPM |
SRP040447_lung | 0 .00 RPM | 28 .07 RPM |
SRP040447_skeletal_muscle | 0 .41 RPM | 25 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015284 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002251 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006044 | 2 retrocopies |
retro_cpor_692 , retro_cpor_835,
|
Equus caballus | ENSECAG00000019274 | 1 retrocopy | |
Felis catus | ENSFCAG00000008008 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001547 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017665 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038965 | 10 retrocopies | |
Pongo abelii | ENSPPYG00000011602 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014114 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001862 | 4 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000010600 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003392 | 1 retrocopy |