RetrogeneDB ID: | retro_mmus_995 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:16045707..16046100(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2l3 | ||
Ensembl ID: | ENSMUSG00000038965 | ||
Aliases: | Ube2l3, C79827, UbcM4, Ubce7 | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:MGI Symbol;Acc:MGI:109240] |
Percent Identity: | 87.79 % |
Parental protein coverage: | 85.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAE |
N...DEANLLT.QGLIV.DN...DKG.FRIEINFPAEYPFKPPKIT.KTKIYHPN.DEKGQVCLPVISAE | |
Retrocopy | NLRADEANLLTRQGLIVLDNHSHDKGVFRIEINFPAEYPFKPPKITLKTKIYHPNTDEKGQVCLPVISAE |
Parental | NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD |
NWKPATK.DQVIQSL.ALVNDPQPEHPLRAD.AEEYSKDR.KFCKNAEEFTKKYGEKR.VD | |
Retrocopy | NWKPATKADQVIQSLTALVNDPQPEHPLRADRAEEYSKDRRKFCKNAEEFTKKYGEKRSVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .73 RPM |
SRP007412_heart | 0 .00 RPM | 24 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 25 .72 RPM |
SRP007412_liver | 0 .00 RPM | 19 .47 RPM |
SRP007412_testis | 0 .00 RPM | 11 .98 RPM |